Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C23
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.39 
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    26   3.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   3.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   3.6  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   6.3  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   8.4  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    25   8.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 24/88 (27%), Positives = 33/88 (37%)
 Frame = +2

Query: 92  SKPTTENDLTEGRGIGSTIWGWITYPFTWWYETGQTPVNDQLVQSSTYGPYEVTEIGKPN 271
           S P T   LT      ST   + + P T       TP+      +ST  PY  T +   N
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVT------STPLTTTNCTTSTSVPYTSTPVTSSN 513

Query: 272 ITVSCNDQTCTTTKCDINGCRNITCTIY 355
            T+S +    T+T      C   T  +Y
Sbjct: 514 YTIS-SSTPVTSTPVTTTNCTTSTSVLY 540



 Score = 28.7 bits (61), Expect = 0.51
 Identities = 25/91 (27%), Positives = 35/91 (38%)
 Frame = +2

Query: 83  ISLSKPTTENDLTEGRGIGSTIWGWITYPFTWWYETGQTPVNDQLVQSSTYGPYEVTEIG 262
           IS S P T   +T      ST   + + P T       TP+      +ST  PY  T + 
Sbjct: 516 ISSSTPVTSTPVTTTNCTTSTSVLYTSTPVT------STPLATTNCTTSTSVPYTSTPVT 569

Query: 263 KPNITVSCNDQTCTTTKCDINGCRNITCTIY 355
             N T+S +    T+T      C   T  +Y
Sbjct: 570 SSNYTIS-SSTPVTSTPVTTTNCTTSTSVLY 599


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 156 QPHIVDPIPRPSVRSF 109
           QPH + PIP+PSV  F
Sbjct: 81  QPHDLLPIPQPSVEDF 96


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 326  GCRNITCTIYDTDLTGICREYHTIKPEEISPSNKPVSEPIQDGLVG 463
            G  ++T ++ +T L    R    +KPEE+  S     E I D +VG
Sbjct: 1341 GTVSVTSSVIETILPHALRRIGALKPEELGKSTY-FMEGIHDVIVG 1385


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 86  SLSKPTTENDLTEGRGIGSTIWGWITYPFTWWYETGQTPVNDQLVQSS 229
           SL+ PT  +  T      +T   W+T  FT +     TPV    + S+
Sbjct: 447 SLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFST 494


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 80  HISLSKPTTENDLTEGRGIGSTIWGWITYP----FTWWYETGQTPVNDQLVQSSTYGPYE 247
           +ISLS+P   ND  E + +   +W            + Y+TG       +V  ++ G +E
Sbjct: 65  NISLSEPHALNDTVEDQPVSKWVWVLAFAAGIGGLLFGYDTGVIS-GALVVIGTSLGGHE 123

Query: 248 VTEIGKPNIT 277
           +T  GK  IT
Sbjct: 124 LTNGGKEFIT 133


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 122 EGRGIGSTIWGWITYPFTWWYETGQTPVNDQLVQSSTYGPYEVT-EIGKPNITVSCNDQT 298
           +G+G+GS +      P  ++Y  G+ P+N Q   S   G +     + + N     +   
Sbjct: 29  QGKGVGSNLGSHFFEPVEYYYSDGK-PMN-QTEASQMKGTFSRDFSLNEMNNEFITDSFF 86

Query: 299 CTTT 310
           CTTT
Sbjct: 87  CTTT 90


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 433 YGFVRWRYFFRFYCMILSTYPC*IGIVNSTCNVSTAIYV-TFSSS--TCLVVA 284
           Y F++ RYF  F+C  L  +   + +V    +  T+    TFS S  TC++ A
Sbjct: 14  YKFLQ-RYFHSFHCFFLLCFTVMLCVVQQCSSAMTSFRCPTFSLSKYTCVLPA 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,372
Number of Sequences: 5004
Number of extensions: 45898
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)