Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C23
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AF024493-3|AAB70322.2|  319|Caenorhabditis elegans Hypothetical ...    30   1.1  
U58727-6|AAB00586.1|  112|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
 Frame = +2

Query: 95  KPTTENDLTEGRGIGSTIWGWITYPFTWWYETGQT--PVNDQLVQSSTYGPYEVTEI--- 259
           K T    + EG  + + +WG   Y  T      QT     DQ V  +T G +++ ++   
Sbjct: 459 KNTWNVRIYEGDDVWAVLWGVYGYNNTTSTTCVQTHDSARDQ-VMWTTCGIWKLCQMCRT 517

Query: 260 ----GKPNITVSCNDQTCTTTKCDINGCRNITCTIYDTDLTGICREYHTIKPEEISPSNK 427
                +PN  V  ND        + +GCR I     D D + +  +Y  I P++   ++ 
Sbjct: 518 WIKASRPNEIVGSNDDFFCCENVNHHGCRTIVAE--DNDFSKLPEKYDHILPQKRLTNSA 575

Query: 428 PVSEPIQDGL 457
           P S   Q+ +
Sbjct: 576 PSSSDSQNSI 585


>AF024493-3|AAB70322.2|  319|Caenorhabditis elegans Hypothetical
           protein F23F1.3 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 221 QSSTYGPYEVTEIGKPNITVSCNDQTCTTTKCDINGC 331
           +++   P+++  +G  ++ +  ND+T T ++ DI GC
Sbjct: 38  KTAKLAPFKLENVGLSDLYIEVNDRTWTLSETDIIGC 74


>U58727-6|AAB00586.1|  112|Caenorhabditis elegans Hypothetical
           protein D1005.4 protein.
          Length = 112

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 281 SCNDQTCTTTKCDINGCRNITCTIYDTDLTGICREY 388
           +C D T + T CD NG       + D D+   C  Y
Sbjct: 38  TCPDPTVSITNCDTNGVSCQKEKLGDVDVKACCCNY 73


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 403 RFYCMILST-YPC*IGIVNSTCNVSTAIYVTFSSSTCLVVA 284
           RFYC+         IGI  +TC +S  +++T + S   ++A
Sbjct: 118 RFYCLYFPFGIKFLIGIPITTCAISAVLFITLAISVLSLIA 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,381
Number of Sequences: 27780
Number of extensions: 260289
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)