Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C22
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191 73 8e-14
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095... 71 2e-13
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 29 0.95
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 0.95
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 29 1.7
01_06_1035 + 33964570-33964758,33965664-33965759,33965855-339659... 28 2.2
05_07_0144 - 28007477-28008412 28 2.9
08_02_0225 + 14469037-14469064,14470004-14470215,14470324-144704... 27 3.8
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 27 3.8
04_04_0765 - 27910189-27912393,27912521-27912598 27 3.8
10_01_0236 + 2486371-2486952 27 5.1
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 27 5.1
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 27 5.1
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008 27 6.7
01_06_0608 + 30575897-30576142,30576252-30576755 27 6.7
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 26 8.9
06_03_0880 + 25620487-25620852,25620950-25621041,25621316-256217... 26 8.9
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 26 8.9
03_06_0580 - 34877496-34877723 26 8.9
02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,499... 26 8.9
01_06_0022 + 25675400-25676146 26 8.9
01_05_0335 + 21074117-21074241,21074299-21074929,21075359-210753... 26 8.9
>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
Length = 82
Score = 72.9 bits (171), Expect = 8e-14
Identities = 37/75 (49%), Positives = 48/75 (64%)
Frame = +2
Query: 47 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 226
MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 227 RMGESDDCIVRLTKK 271
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>03_05_0610 -
26108546-26108671,26108739-26108789,26109410-26109542,
26109633-26109682
Length = 119
Score = 71.3 bits (167), Expect = 2e-13
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = +2
Query: 47 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 226
MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 227 RMGESDDCIVRLTKK 271
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 29.5 bits (63), Expect = 0.95
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 137 MRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCV 39
MR P+ G D P + LG HQ+ SA C+
Sbjct: 262 MREPAGGDDVSRPMLFLGEVMSHEHQKGSASCI 294
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.5 bits (63), Expect = 0.95
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -1
Query: 182 HVRLQGPRPLSRAAPM---RGPSHGSDDYSPSISLGSTSQRIHQRRSAFCVSKLHTDRDN 12
H RL+ R SR P RG + + D SP IS + H R + ++H RDN
Sbjct: 269 HDRLRHDRSPSRLEPSPRDRGRHYDNRDRSPYISPRHRMRPSHYRDNTPSRGEMHHHRDN 328
Query: 11 DP 6
P
Sbjct: 329 TP 330
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 209 PRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPS 96
PR QH L PRP+S++APM S + SPS
Sbjct: 69 PRCPGPQDQHHGLPLPRPVSKSAPMPLASPAAAPPSPS 106
>01_06_1035 +
33964570-33964758,33965664-33965759,33965855-33965923,
33966644-33966748,33966852-33966908,33967065-33967265,
33967915-33968007,33968070-33968169,33968322-33968421,
33968869-33968954,33969294-33969403
Length = 401
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 182 HVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQR 69
H+ Q PL+RA P H SPS+ LGS + R
Sbjct: 6 HLLSQSLYPLNRANPAAARGHLRFQASPSVRLGSGTSR 43
>05_07_0144 - 28007477-28008412
Length = 311
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 276 PSFL-VSLTMQSSDSPILRMAPQTTYILEESAARPVAGSTSA 154
P FL +S + S ++APQTT I ++A V STSA
Sbjct: 35 PGFLSLSPSSVSPGDAAAQLAPQTTTITTSNSAAAVGNSTSA 76
>08_02_0225 +
14469037-14469064,14470004-14470215,14470324-14470433,
14470498-14470765,14470878-14471087,14471162-14471230,
14473346-14473591,14473672-14473740,14473808-14473871,
14474468-14474583
Length = 463
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 167 GPRPLSRAAPMRGPSHGSDDYSPSISLGS--TSQRIHQRRSAFCVSKLHTD 21
G + SR PM GP GS + S SQ ++S+ C+ LHT+
Sbjct: 326 GKKSSSRNGPMSGPGRGSRGPQKNTSRKEFPPSQNGVGKKSSDCIEILHTE 376
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 236 LPSCEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMRGP 126
L + E L++ SW Q+ RL+ P PL+ P + P
Sbjct: 228 LATFEGLYKEALSWFEQECQRLEPPMPLALPPPPQPP 264
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -1
Query: 173 LQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCVSKLHTD 21
L GP P R GP+ ++ P + LGS H +A S L D
Sbjct: 296 LGGPSPPLRLVDSAGPTCDLEESPPLVPLGSPPALAHAAHAATSFSPLADD 346
>10_01_0236 + 2486371-2486952
Length = 193
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 218 LHRPRTSWRSQQHVRL-QGPRPLSRAAPMRGP---SHGSDDYSPSISLGSTSQRIH 63
+ +PRT + R Q RPL RAAP+ P + DD ++ G +H
Sbjct: 108 IKKPRTPRSGEGQARAPQRRRPLERAAPLPPPAAVAEALDDLEREVTRGFVEDLLH 163
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 27.1 bits (57), Expect = 5.1
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -2
Query: 196 GGVSSTSGCRVHVRYH-ELHRCVVLRMDQTIT---RRAFPWAVQVNEFTSVVL 50
GG SS+S V +H +H R ++ RRA PWA +E T VVL
Sbjct: 103 GGSSSSSTATARVPFHLPIHPPPPEREEEEEKKGIRRAVPWAAARDEETKVVL 155
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 213 QTTYILEESAARPVAGSTSAIT 148
Q T ILEE+ +P+ STSAIT
Sbjct: 510 QITNILEENVVQPLLVSTSAIT 531
>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
Length = 460
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -1
Query: 233 PSCEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRR 54
P E H P+T WR H + G +S + PS S ++ + + +RR
Sbjct: 62 PKMETSHEPQTPWRLAVHPAVVGTVRVSGCGAVVAPSRRQCRVSAAVLTAAETATATRRR 121
>01_06_0608 + 30575897-30576142,30576252-30576755
Length = 249
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 67 IR*LVLPKEML---GE*SSDPCEGPRIGAARDSGRG 165
+R ++ KE L G SDPC+ RIGA D+GRG
Sbjct: 186 LRAMLAKKEELAAAGNNGSDPCKRRRIGA--DTGRG 219
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 100 GE*SSDPCEGPRIGAARDSGRGP-CNRT 180
G+ SS C G +RD+ GP CNRT
Sbjct: 89 GDLSSSDCAGCGTNVSRDAVAGPTCNRT 116
>06_03_0880 +
25620487-25620852,25620950-25621041,25621316-25621789,
25622079-25623039
Length = 630
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 279 IPSFLVSLTMQSSDSPILRMAPQTTYILEESAARPVAGSTSAITSCTDAWSFAW 118
IPS L L++ + D +++ Y+ E + G I+ TD+W FAW
Sbjct: 195 IPSLLFGLSLPNPD--LIQRLGTPNYMAPEQWQPSIRGP---ISYETDSWGFAW 243
>04_04_1079 - 30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 26.2 bits (55), Expect = 8.9
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -1
Query: 161 RPLSRAAPMRGPSHGSDDY--SPSISLGSTSQRIHQRRSAFCVSKLHTD 21
RP+ R RG H DY S G T Q QR A +SK+ D
Sbjct: 958 RPVRRTRARRGKQHAKIDYGQSEESDPGETGQD-DQRLDADYISKMEED 1005
>03_06_0580 - 34877496-34877723
Length = 75
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -1
Query: 230 SCEWLHRPRTSWRSQQHVRLQGPRPLSR---AAPMRGPSHGSDD 108
S W H + + R + R G +R +A RGPSHG DD
Sbjct: 11 SGSWAHEVKQALRDKLR-RAYGTAGAARPAASAVSRGPSHGGDD 53
>02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,
4996532-4997168,4997266-4997320,4997439-4997675
Length = 1245
Score = 26.2 bits (55), Expect = 8.9
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = -3
Query: 285 ASIPSFLVSLTMQSSDSPILRM------APQTTYILEESAARPVAGSTSAITSCTDAWSF 124
A S L ++T SS ILR+ P+ I + A G++ ++ +CT A F
Sbjct: 860 AEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSMSLMTCTWALDF 919
Query: 123 AWIRRLLAEHFL 88
+ RL+AEH +
Sbjct: 920 WYGGRLMAEHHI 931
>01_06_0022 + 25675400-25676146
Length = 248
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 274 VFLSEPDYAVVGLSHPANGSTDHVHLGGVSSTSGC 170
+FL E + VG + ++ STD L GVS S C
Sbjct: 82 LFLEEGRTSSVGSTSSSSSSTDIAELDGVSPDSYC 116
>01_05_0335 +
21074117-21074241,21074299-21074929,21075359-21075399,
21078458-21078560,21078755-21079601,21079938-21080689,
21080712-21080970,21081011-21081354
Length = 1033
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 121 CEGPRIGAARDSGRGPCNRTCC*LLQDVRGLWSHSQDGR 237
C G I + D + P C Q VRG W H + GR
Sbjct: 90 CGGSNIVHSNDECKQPAQMWCG---QRVRGKWFHRESGR 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,013,100
Number of Sequences: 37544
Number of extensions: 208524
Number of successful extensions: 815
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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