Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C21
(501 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 283 1e-75
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 282 3e-75
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 256 3e-67
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 224 8e-58
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 216 3e-55
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 211 6e-54
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 210 2e-53
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 207 9e-53
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 126 7e-50
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 188 6e-47
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 179 3e-44
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 148 8e-35
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 115 7e-25
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 105 4e-22
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 105 7e-22
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 104 1e-21
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 102 5e-21
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 101 1e-20
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 99 5e-20
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 88 1e-16
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 88 1e-16
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 86 4e-16
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 85 1e-15
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 84 2e-15
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 83 3e-15
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 82 8e-15
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 79 4e-14
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 76 5e-13
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 76 5e-13
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 75 7e-13
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 69 8e-11
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 63 4e-09
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 60 4e-08
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 46 6e-04
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.024
UniRef50_UPI00006DD0EE Cluster: hypothetical protein Bmal2_03001... 35 0.90
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 2.1
UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1; ... 33 2.7
UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6; Methanococcal... 33 3.6
UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1; Lactob... 33 4.8
UniRef50_A5ZHX4 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_Q0U2Z5 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 4.8
UniRef50_Q1NH40 Cluster: TonB-dependent receptor; n=1; Sphingomo... 32 6.3
UniRef50_A4Y0X1 Cluster: Peptidoglycan-binding LysM; n=1; Pseudo... 32 6.3
UniRef50_Q381Q5 Cluster: Putative uncharacterized protein; n=1; ... 32 6.3
UniRef50_Q05223 Cluster: Major head protein Gp17; n=5; Siphoviri... 32 6.3
UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor; n... 32 6.3
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 32 6.3
UniRef50_UPI0000E21D3F Cluster: PREDICTED: similar to major ampu... 32 8.3
UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1; Lactoba... 32 8.3
UniRef50_A6S3K5 Cluster: Putative uncharacterized protein; n=1; ... 32 8.3
UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep... 32 8.3
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 283 bits (695), Expect = 1e-75
Identities = 128/160 (80%), Positives = 142/160 (88%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
YKLC V++ G K VP+LVTHDGRT+RYP+PLI NDSV
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSV 160
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 282 bits (692), Expect = 3e-75
Identities = 126/160 (78%), Positives = 142/160 (88%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V KI QR IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAK
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
YKLC VR++ G K +P+LVTHD RT+RYP+PLIKVND++
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTI 160
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 256 bits (626), Expect = 3e-67
Identities = 116/160 (72%), Positives = 134/160 (83%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
+KLC VR + G K +PYL T+DGRT+RYP+PLIK ND++
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTI 160
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 224 bits (548), Expect = 8e-58
Identities = 96/160 (60%), Positives = 123/160 (76%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V IVK R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
+KLC + + G ++PY+VTHDGRT+RYP P ++ ND++
Sbjct: 121 FKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTI 160
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 216 bits (527), Expect = 3e-55
Identities = 102/134 (76%), Positives = 114/134 (85%), Gaps = 1/134 (0%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 203
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 204 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 383
KI QR IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAKV 121
Query: 384 -KLCNVRRVATGPK 422
L ++R + P+
Sbjct: 122 GALVHLRTSRSSPQ 135
Score = 67.7 bits (158), Expect = 1e-10
Identities = 26/41 (63%), Positives = 35/41 (85%)
Frame = +3
Query: 378 KYKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
+YKLC V+++ G K +P+LVTHD RT+RYP+PLIKVND+V
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTV 192
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 211 bits (516), Expect = 6e-54
Identities = 101/160 (63%), Positives = 122/160 (76%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDE 70
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V KI Q IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE K
Sbjct: 71 VKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVK 130
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
YKLC +R++ K +P+LV HD T+R+P+ LIKVND++
Sbjct: 131 YKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTI 170
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 210 bits (512), Expect = 2e-53
Identities = 95/164 (57%), Positives = 122/164 (74%)
Frame = +3
Query: 9 VLFNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYAL 188
VLF M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYAL
Sbjct: 11 VLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYAL 70
Query: 189 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITP 368
T E + IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I
Sbjct: 71 TAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEA 130
Query: 369 EEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
+EA +KL V + G K +P++VTHDGRT+ Y +P ++V+D++
Sbjct: 131 KEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDAL 174
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 207 bits (506), Expect = 9e-53
Identities = 93/160 (58%), Positives = 122/160 (76%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
L I+K+ I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+
Sbjct: 61 SLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESM 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
+KLC V RV+ G K +PY+VTHDGRT+R+P LIK NDS+
Sbjct: 121 FKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSI 160
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 126 bits (303), Expect(2) = 7e-50
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 201 VLKIVKQRLIKVDGK 245
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
Score = 93.9 bits (223), Expect(2) = 7e-50
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +3
Query: 330 DVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
D KGRF +HRITPEEAKYKL VR++ G K +P+LVTHD RT+RYP+PLIK+ND++
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTI 132
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 188 bits (458), Expect = 6e-47
Identities = 88/155 (56%), Positives = 107/155 (69%)
Frame = +3
Query: 36 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 215
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 216 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCN 395
+Q L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMK 122
Query: 396 VRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
V + T VP VTHDG +RYP+P + D++
Sbjct: 123 VVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTI 157
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 179 bits (436), Expect = 3e-44
Identities = 95/194 (48%), Positives = 122/194 (62%), Gaps = 31/194 (15%)
Frame = +3
Query: 12 LFNMARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----A 104
++ ARGPKKHLKR+NAPK+WML+ KL +Y A
Sbjct: 79 IYKKARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQA 138
Query: 105 PRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGF 278
RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 139 TRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGL 198
Query: 279 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPKSVPYLVTHDGRT 458
MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL V A GP +PY+VTHD RT
Sbjct: 199 MDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRT 258
Query: 459 LRYPEPLIKVNDSV 500
+R+P P IK+ D++
Sbjct: 259 IRFPNPEIKIGDTL 272
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 148 bits (358), Expect = 8e-35
Identities = 70/160 (43%), Positives = 105/160 (65%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
+ I+ ++ IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA
Sbjct: 61 LSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEAS 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
Y+L V + + +PY+V+ G ++R+ +P I + ++
Sbjct: 121 YRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTI 159
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 115 bits (276), Expect = 7e-25
Identities = 57/143 (39%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Frame = +3
Query: 30 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 386
KI+ + I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVK 126
Query: 387 LCNVRRVATGPKSVPYLVTHDGR 455
+C ++ + HDG+
Sbjct: 127 VCRIKNKTYVRGGNLQITMHDGK 149
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 105 bits (253), Expect = 4e-22
Identities = 56/157 (35%), Positives = 88/157 (56%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 386
KI++ I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ K
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVK 121
Query: 387 LCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDS 497
LC + L HDGR ++KV+D+
Sbjct: 122 LCKIVNKTVVKGGNIQLNLHDGR-----NQIVKVSDA 153
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 105 bits (251), Expect = 7e-22
Identities = 58/141 (41%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Frame = +3
Query: 42 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 218
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 219 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNV 398
+ +KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 399 RRVATGPKSVPYLVTHDGRTL 461
L HDGR L
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNL 143
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 104 bits (250), Expect = 1e-21
Identities = 54/145 (37%), Positives = 78/145 (53%)
Frame = +3
Query: 27 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 206
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 207 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 386
+I+ R+I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YK
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYK 125
Query: 387 LCNVRRVATGPKSVPYLVTHDGRTL 461
L +RR T HDGR +
Sbjct: 126 LAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 102 bits (244), Expect = 5e-21
Identities = 53/157 (33%), Positives = 81/157 (51%)
Frame = +3
Query: 30 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 209
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 210 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 389
I+ + VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KL
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKL 122
Query: 390 CNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
C + +T + HDG+ + E V D +
Sbjct: 123 CKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVI 159
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 101 bits (241), Expect = 1e-20
Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Frame = +3
Query: 21 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 197
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 198 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEE 374
E K++ + +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE
Sbjct: 61 EARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEE 119
Query: 375 AKYKLCNVRRVATGPKSVPYLVTHDGRTL--RYPEPLIKVND 494
K + T L HDGR + R +P V D
Sbjct: 120 GDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVED 161
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 99.1 bits (236), Expect = 5e-20
Identities = 50/140 (35%), Positives = 72/140 (51%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVR 401
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C +
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
L HDGR +
Sbjct: 123 DKTMVKAGKIQLNLHDGRNI 142
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 87.8 bits (208), Expect = 1e-16
Identities = 46/140 (32%), Positives = 71/140 (50%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVR 401
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+C +
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
L HDG T+
Sbjct: 123 NKTALRGGKIQLNLHDGTTM 142
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 87.8 bits (208), Expect = 1e-16
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Frame = +3
Query: 36 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 212
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 213 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 392
+ + VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYG 125
Query: 393 N-VRRVATGPKSVPYLVTHDGRT 458
+R+V+ + Y +T DGRT
Sbjct: 126 KIIRKVSVRGGKIQYTLT-DGRT 147
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 86.2 bits (204), Expect = 4e-16
Identities = 45/140 (32%), Positives = 73/140 (52%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVR 401
R + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
+T + HDGR +
Sbjct: 123 GKSTITDGKTQIHLHDGRNI 142
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 84.6 bits (200), Expect = 1e-15
Identities = 51/140 (36%), Positives = 67/140 (47%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVR 401
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK +
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
T V L DGR +
Sbjct: 123 NKTTLKSGVLQLNLEDGRNI 142
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 83.8 bits (198), Expect = 2e-15
Identities = 43/140 (30%), Positives = 69/140 (49%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVR 401
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC +
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 402 RVATGPKSVPYLVTHDGRTL 461
T L +DG +
Sbjct: 122 NKTTVKGGKIQLNLNDGTNI 141
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 83.4 bits (197), Expect = 3e-15
Identities = 45/160 (28%), Positives = 77/160 (48%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
K+VK + V+GK +P MD +S N+ +R++ G+ T++ I E
Sbjct: 61 AQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKD 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
K+C V ++ ++T D R L+ IKV DS+
Sbjct: 121 LKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSL 160
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 81.8 bits (193), Expect = 8e-15
Identities = 45/125 (36%), Positives = 66/125 (52%)
Frame = +3
Query: 39 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 218
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 219 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNV 398
QR + V+G+ D G D+VSI K + +R+ DVKG I E AK +LC +
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
Query: 399 RRVAT 413
R T
Sbjct: 122 RNKTT 126
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 79.4 bits (187), Expect = 4e-14
Identities = 47/149 (31%), Positives = 73/149 (48%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRV 407
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL VR
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 408 ATGPKSVPYLVTHDGRTLRYPEPLIKVND 494
P + L THDGRT + KV D
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGD 152
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 75.8 bits (178), Expect = 5e-13
Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCN-VRR 404
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL V++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 405 VATGPKSVPYLVTHDGRTL 461
G + L HDG+T+
Sbjct: 127 TIIGTGKI-QLGFHDGKTI 144
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 75.8 bits (178), Expect = 5e-13
Identities = 39/122 (31%), Positives = 65/122 (53%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRV 407
+ ++G + TD D++S K ++ + ++ D KGR + I+ + AK +L V
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 408 AT 413
T
Sbjct: 124 TT 125
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 75.4 bits (177), Expect = 7e-13
Identities = 35/119 (29%), Positives = 61/119 (51%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNV 398
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC +
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRI 121
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 68.5 bits (160), Expect = 8e-11
Identities = 39/140 (27%), Positives = 65/140 (46%)
Frame = +3
Query: 42 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 221
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 222 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVR 401
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL +
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 402 RVATGPKSVPYLVTHDGRTL 461
L HDG TL
Sbjct: 123 TKTHVSGGDVQLGLHDGETL 142
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 62.9 bits (146), Expect = 4e-09
Identities = 43/153 (28%), Positives = 65/153 (42%)
Frame = +3
Query: 39 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 218
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 219 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNV 398
++VDG RT + G MDVV + T +++R++ +I E K+C V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 399 RRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDS 497
+ + HDGR+L E + V DS
Sbjct: 128 TSKTSISGGRTQIGFHDGRSLISDEK-VSVGDS 159
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 59.7 bits (138), Expect = 4e-08
Identities = 45/151 (29%), Positives = 67/151 (44%)
Frame = +3
Query: 48 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 227
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 228 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRV 407
+ VDGKV + GFMD +++ + L + YD KG+ I E KL V+
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 408 ATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
+ HDG T+ IK DSV
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSV 154
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 45.6 bits (103), Expect = 6e-04
Identities = 29/71 (40%), Positives = 36/71 (50%)
Frame = -2
Query: 494 VVHLDERFRVPERAPVVRHQVRHALGAGRDAPHIAQLVLGFFRCDTVDSEPSFHIIY*TE 315
V LD RV A VV+ RHAL APH+AQLVL F D V +E S ++ E
Sbjct: 123 VTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPE 182
Query: 314 *LICFLNGYNV 282
I +G +V
Sbjct: 183 VFIALFDGDDV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.024
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +3
Query: 114 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 293
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 294 IEKTNELFRLIYDVKG 341
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI00006DD0EE Cluster: hypothetical protein
Bmal2_03001706; n=1; Burkholderia mallei 2002721280|Rep:
hypothetical protein Bmal2_03001706 - Burkholderia
mallei 2002721280
Length = 356
Score = 35.1 bits (77), Expect = 0.90
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -1
Query: 501 APSRSP**AVPGTGACARRASPGTARSWGRSRRAAHCTACTW 376
A R+P TGA A+ A+P +RSW RSR + +C W
Sbjct: 295 AAFRAPGNGANATGAGAQHAAPSWSRSWSRSRSWSWSWSCGW 336
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 2.1
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +3
Query: 72 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 251
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 252 TDPT-YPAGFMDVVSIEKTNELFRLIYDVKG 341
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 105
Score = 33.5 bits (73), Expect = 2.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 404 RRDRPQERAVPGDARRAHAPVPGT 475
RRDRPQER P RRA P+ G+
Sbjct: 73 RRDRPQERLAPRSLRRAERPLTGS 96
>UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6;
Methanococcales|Rep: DNA topoisomerase 1 - Methanococcus
jannaschii
Length = 761
Score = 33.1 bits (72), Expect = 3.6
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +3
Query: 111 PSTGPHKLRECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 287
P T KL + + + N +K + + G +I+K+ L V+GK + DP +PA +
Sbjct: 316 PRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGK-KEDPAHPAIHIVD 374
Query: 288 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGPK 422
+ E+ +E + IYD+ R T+ + A+ + NV+ G K
Sbjct: 375 IPKEELSEKEKEIYDLIARRTLAAFW-DNAEREYLNVKIDIKGEK 418
>UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1;
Lactobacillus casei ATCC 334|Rep: Predicted membrane
protein - Lactobacillus casei (strain ATCC 334)
Length = 981
Score = 32.7 bits (71), Expect = 4.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 259 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSL 128
GS TFP L + + I+ LP+S + FR ITSG S ++
Sbjct: 891 GSGGTFPMELTNQFYNIIHPFLPMSYSIMNFRNAITSGIASNTV 934
>UniRef50_A5ZHX4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides caccae ATCC 43185|Rep: Putative
uncharacterized protein - Bacteroides caccae ATCC 43185
Length = 189
Score = 32.7 bits (71), Expect = 4.8
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = -3
Query: 394 LHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCF 215
LH LYLA + W IK F+ TS+ Y + +P L R
Sbjct: 110 LHDLYLADIHIANWGRKFAERECIKSEQLFISRQFKTSLE--RYQDLIADYPDILQRVPL 167
Query: 214 TILSTSLPVS-AYLSRFRRKI 155
I+++ L +S LSR R KI
Sbjct: 168 GIIASYLGISQVSLSRIRAKI 188
>UniRef50_Q0U2Z5 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 654
Score = 32.7 bits (71), Expect = 4.8
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -3
Query: 322 KRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGK 143
+R++ V S +T+ +P G + S P+ +R F LS S + ++T GK
Sbjct: 286 RRHDYDVQSTETSLSSPRGLLKSPIPPPTVTVRSEFPTLSRSRQQQSLTCLITVEVTEGK 345
Query: 142 HSRSLWGPVEGRGAYTPPSLSNIHALGAFKRFK 44
P + RG PP S A G+F R K
Sbjct: 346 WRAD---PEDMRGVAPPPVPSIASATGSFSRGK 375
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 4.8
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 75 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 236
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_Q1NH40 Cluster: TonB-dependent receptor; n=1; Sphingomonas
sp. SKA58|Rep: TonB-dependent receptor - Sphingomonas
sp. SKA58
Length = 810
Score = 32.3 bits (70), Expect = 6.3
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -3
Query: 439 TRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYV 260
T +G L P T + Y + S + VN T ++ F ++ D SIN GY+
Sbjct: 415 TDFGFNLAPANTNL---ATYKSESKALFAQVNYSLTERLRVTGGFRYTWDKRSINRMGYI 471
Query: 259 GSVRTFPSTLMR--RCFTILSTSL 194
G + F + + R T+ +T L
Sbjct: 472 GGIPGFSGSFVSNGRLITLPATGL 495
>UniRef50_A4Y0X1 Cluster: Peptidoglycan-binding LysM; n=1;
Pseudomonas mendocina ymp|Rep: Peptidoglycan-binding
LysM - Pseudomonas mendocina ymp
Length = 744
Score = 32.3 bits (70), Expect = 6.3
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +3
Query: 192 GNEVLKIVKQRL-IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI----YDVKGRFTIH 356
G+ + I + RL + G++ P GF VV +EKT EL +L+ DV R+ +
Sbjct: 590 GDFGITIARDRLAVNCKGRLVFGPGASGGFSTVVDLEKTYELLKLVCEALADVDYRYLL- 648
Query: 357 RITPEEAKYKLCNVRRVATGP 419
++ E Y + +VA+ P
Sbjct: 649 GVSQEAFNYMAWGLYQVASAP 669
>UniRef50_Q381Q5 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 347
Score = 32.3 bits (70), Expect = 6.3
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = -3
Query: 421 LGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTF 242
LG V L+ Y+ I LP + ++ N FV ++ S PAG G V
Sbjct: 166 LGVVMEECNLYGAYIPGHPHALLIAYLPHSPWVLLRNLFVSNLTKISECPAGGEGGVNKV 225
Query: 241 PSTLMRRCFTI 209
S ++RR I
Sbjct: 226 DSLVLRRTLVI 236
>UniRef50_Q05223 Cluster: Major head protein Gp17; n=5;
Siphoviridae|Rep: Major head protein Gp17 -
Mycobacteriophage L5
Length = 326
Score = 32.3 bits (70), Expect = 6.3
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 307 FVFSMDTTSINPAGYVGSVRTFPSTLMRRCF---TILSTSLPVSAYLSRFRRKIT 152
FV S +T NPA Y+G++RT +T F I T P +L++ ++++
Sbjct: 104 FVASAETVRANPANYLGTMRTKVATAFAMAFDNAAINGTDSPFPTFLAQTTKEVS 158
>UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor;
n=10; Euteleostomi|Rep: Thioredoxin, mitochondrial
precursor - Bos taurus (Bovine)
Length = 166
Score = 32.3 bits (70), Expect = 6.3
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 178 LSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
L RF I SGK S+S W PV R TP
Sbjct: 7 LRRFLTSIISGKPSQSRWAPVASRALQTP 35
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 32.3 bits (70), Expect = 6.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 261 TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRV 407
+YPA + D I + E+FRL+ + + RI + K C++ RV
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
>UniRef50_UPI0000E21D3F Cluster: PREDICTED: similar to major
ampullate spidroin 2; n=2; Pan troglodytes|Rep:
PREDICTED: similar to major ampullate spidroin 2 - Pan
troglodytes
Length = 260
Score = 31.9 bits (69), Expect = 8.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 398 AARRDRPQERAVPGDARRAHAPVPGTAHQGERLG 499
A+R+D Q A+PG A PGTA QG R+G
Sbjct: 10 ASRKDGQQHPALPGK-EEGWAAAPGTARQGGRMG 42
>UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1;
Lactobacillus plantarum|Rep: Integral membrane protein -
Lactobacillus plantarum
Length = 1106
Score = 31.9 bits (69), Expect = 8.3
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -3
Query: 259 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 80
GS TFP + + F + LP++ + FR+ +T G S W + T SL
Sbjct: 1019 GSGGTFPMEITNKFFNAIHPYLPLTYSIQAFRQALTGGWGSGIFWSSIVVLAGITIVSLG 1078
Query: 79 NIHALGAF 56
+ A F
Sbjct: 1079 LLWASMVF 1086
>UniRef50_A6S3K5 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 571
Score = 31.9 bits (69), Expect = 8.3
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -3
Query: 340 PFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTS 197
P +K +NS S+DTTS NP+ Y S T T+ + +I STS
Sbjct: 301 PTYESVKSSNSGCKSLDTTSYNPSAYKISDATTCETINEKETSISSTS 348
>UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep:
POM121-like protein 2 - Mus musculus (Mouse)
Length = 972
Score = 31.9 bits (69), Expect = 8.3
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 277 NPAGYVGSV-RTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPV 116
NP +V R FP M+R + SLP + S +R I S +H R+ W PV
Sbjct: 66 NPTAFVSEAWRRFP---MKRPQNPIMGSLPSDWWESYLKRNIWSLRHPRATWSPV 117
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,080,027
Number of Sequences: 1657284
Number of extensions: 11462466
Number of successful extensions: 38232
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 36791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38214
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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