Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C21
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 247 4e-66
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 246 8e-66
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 245 1e-65
01_01_1101 + 8731427-8732938 29 1.6
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582... 28 3.7
04_04_0950 + 29609484-29611025 27 6.4
02_04_0395 + 22590097-22590343,22590566-22590921 27 6.4
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 27 6.4
12_01_0337 - 2591689-2593839 27 8.5
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 8.5
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 247 bits (604), Expect = 4e-66
Identities = 111/159 (69%), Positives = 130/159 (81%)
Frame = +3
Query: 24 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 203
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 204 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 383
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 384 KLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
KLC VR V G K +P+L T+DGRT+RYP+PLIK ND++
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTI 176
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 246 bits (602), Expect = 8e-66
Identities = 109/160 (68%), Positives = 131/160 (81%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
+KLC VR V G K +PYL T+DGRT+RYP+PLIK ND++
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTI 160
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 245 bits (600), Expect = 1e-65
Identities = 108/160 (67%), Positives = 131/160 (81%)
Frame = +3
Query: 21 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
+KLC VR V G K +PYL T+DGRT+RYP+P+IK ND++
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTI 160
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 206 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 72
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>12_01_1046 -
10756062-10756326,10757618-10757782,10757901-10758206,
10758279-10758377,10760555-10760670,10760756-10760848,
10760946-10761107,10761784-10762170
Length = 530
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 477 AVPGTGACARRASPGTARSWGRSRRAAHCTAC 382
AV + A A ASP A WGRS A+ C
Sbjct: 48 AVSASSAGAGAASPSPAAGWGRSDAASSLERC 79
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 220 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>02_04_0395 + 22590097-22590343,22590566-22590921
Length = 200
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 429 ARSWGRSRRAAHCTACTWLLQV*YGG 352
ARSW RSRR H W L GG
Sbjct: 47 ARSWIRSRRRGHGVGEAWALAAATGG 72
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 315 FRLIYDVKGRFTIHRITPEEAKYKLCNVRRVATGP 419
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 451 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 323
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 130 LWGPVEGRGAYTPPSLSNIHALGAFKR 50
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,174,138
Number of Sequences: 37544
Number of extensions: 329661
Number of successful extensions: 1054
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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