Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C21
         (501 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   283   7e-77
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   283   7e-77
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   283   7e-77
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   278   4e-75
BT001299-1|AAN71054.1|  905|Drosophila melanogaster AT12234p pro...    28   6.2  
AY061207-1|AAL28755.1|  707|Drosophila melanogaster LD15658p pro...    28   6.2  
AE014297-4542|AAN14217.1|  905|Drosophila melanogaster CG31029-P...    28   6.2  
AE014134-3600|EAA46022.2|  714|Drosophila melanogaster CG17490-P...    28   6.2  
AE013599-1564|AAM68647.1|  737|Drosophila melanogaster CG8772-PB...    28   6.2  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  283 bits (695), Expect = 7e-77
 Identities = 128/160 (80%), Positives = 142/160 (88%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
           V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
           YKLC V++   G K VP+LVTHDGRT+RYP+PLI  NDSV
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSV 160


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  283 bits (695), Expect = 7e-77
 Identities = 128/160 (80%), Positives = 142/160 (88%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
           V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
           YKLC V++   G K VP+LVTHDGRT+RYP+PLI  NDSV
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSV 160


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  283 bits (695), Expect = 7e-77
 Identities = 128/160 (80%), Positives = 142/160 (88%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
           V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
           YKLC V++   G K VP+LVTHDGRT+RYP+PLI  NDSV
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSV 160


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  278 bits (681), Expect = 4e-75
 Identities = 126/160 (78%), Positives = 140/160 (87%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
           V KIV QRL+KV GKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 381 YKLCNVRRVATGPKSVPYLVTHDGRTLRYPEPLIKVNDSV 500
           YKLC V++   G K VP+LVTHDGRT+RYP+PLI  NDSV
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSV 160


>BT001299-1|AAN71054.1|  905|Drosophila melanogaster AT12234p
           protein.
          Length = 905

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 479 ERFRVPERAPVVRHQVRHALGAGRDAPHIAQLVLGFFRCDTVDSEPSFHIIY 324
           ER R P+RA V    V H   A    PH A +++ +  C   + +  F  IY
Sbjct: 801 ERVRQPDRAHVETQYVDHDWAAPTMYPHPANMLVQYGGCVMGERKKMFPWIY 852


>AY061207-1|AAL28755.1|  707|Drosophila melanogaster LD15658p
           protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/98 (22%), Positives = 41/98 (41%)
 Frame = -2

Query: 383 VLGFFRCDTVDSEPSFHIIY*TE*LICFLNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 204
           V G + C  +D +     +     L C   G +    + +R  +P+F       L HN +
Sbjct: 332 VSGIYACCWIDQKEELFCLSDNNTLYCISFGMSEMNDQTLRISTPNFAPSALMRLQHNAE 391

Query: 203 HLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAA 90
            L   ++  + + Q+ +      QL+   +  RRV+AA
Sbjct: 392 ALQEYKKHPDSLRQKLYREYKQQQLISMSKNIRRVNAA 429


>AE014297-4542|AAN14217.1|  905|Drosophila melanogaster CG31029-PA
           protein.
          Length = 905

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 479 ERFRVPERAPVVRHQVRHALGAGRDAPHIAQLVLGFFRCDTVDSEPSFHIIY 324
           ER R P+RA V    V H   A    PH A +++ +  C   + +  F  IY
Sbjct: 801 ERVRQPDRAHVETQYVDHDWAAPTMYPHPANMLVQYGGCVMGERKKMFPWIY 852


>AE014134-3600|EAA46022.2|  714|Drosophila melanogaster CG17490-PB,
           isoform B protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/98 (22%), Positives = 41/98 (41%)
 Frame = -2

Query: 383 VLGFFRCDTVDSEPSFHIIY*TE*LICFLNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 204
           V G + C  +D +     +     L C   G +    + +R  +P+F       L HN +
Sbjct: 339 VSGIYACCWIDQKEELFCLSDNNTLYCISFGMSEMNDQTLRISTPNFAPSALMRLQHNAE 398

Query: 203 HLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAA 90
            L   ++  + + Q+ +      QL+   +  RRV+AA
Sbjct: 399 ALQEYKKHPDSLRQKLYREYKQQQLISMSKNIRRVNAA 436


>AE013599-1564|AAM68647.1|  737|Drosophila melanogaster CG8772-PB,
           isoform B protein.
          Length = 737

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 66  KAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK---YALTGNEVLKIVKQRLIKV 236
           ++W L +     AP P  G +   E       +R ++     ++TG E++++VKQ   KV
Sbjct: 4   RSWNLLQYATEKAPIPLDG-YTAEEAAEFKDSIRQKIVDDLKSMTGEELIELVKQNAAKV 62

Query: 237 -DGKVRTDPTYP 269
            + KV   PT P
Sbjct: 63  EEEKVEIPPTEP 74


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,465,896
Number of Sequences: 53049
Number of extensions: 528439
Number of successful extensions: 1464
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)