Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C21
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.1  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   5.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 171 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 272
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 357 RITPEEAKYKLCNVRRVATGPKSVP 431
           ++T EEAK  + N+R+V +     P
Sbjct: 26  KMTIEEAKKTIKNLRKVCSKKNDTP 50


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 213 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 332
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 30  GPKKHLKRLNAP 65
           GPK+HL+ L  P
Sbjct: 336 GPKEHLRSLGIP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,746
Number of Sequences: 438
Number of extensions: 3318
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)