Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C19
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.3  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   4.1  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   5.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.4  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   7.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   7.1  

>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -1

Query: 167 CNVDTASLDEHPSIHSWYISGSISV*LLTNTSTS 66
           C++++AS+  + +   W  + S+S  + TNT++S
Sbjct: 340 CSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSS 373


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 298 IFQIDEPTKHMLLEKYYDLDDAVIRELLGRKL 393
           +  +DEPT H+ LE    L++ +  E+ G  L
Sbjct: 441 LMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTL 472


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 414 VFSMSRRQFSAEKLSDDSII*VVVF 340
           +F+     FS  KLSDDSI  + +F
Sbjct: 204 IFNFKNGSFSTRKLSDDSINHIQLF 228


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 119 SYGLRDAHLVKQCLHCINVE 178
           S G RD H  + C +C+++E
Sbjct: 287 SLGFRDIHAKEACQYCVSLE 306


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 247 ALLERLLTVPSKLSEQMIFQIDEPTKHMLLEKYYDLDDAVIR 372
           +L+E   +VP+ LS   I + ++ TK     +Y+ L   + R
Sbjct: 386 SLVEHRSSVPNHLSHMSITRFEDKTKKSRQYRYFTLQSQLNR 427


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 197 APSFRAAPR*CNVDTASLDEHPSIHSWYISGS 102
           +PS   AP   NVDT S+D   S+ S + S S
Sbjct: 253 SPSAYDAPLLHNVDTQSIDGFVSVASHFSSAS 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,105
Number of Sequences: 5004
Number of extensions: 36920
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)