Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C19
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713...    27   5.3  
03_01_0368 + 2860640-2860855,2860959-2862203                           27   7.0  
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597...    27   7.0  
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195           27   9.2  
10_02_0169 - 6142199-6142581,6143015-6143095,6143313-6143691,614...    27   9.2  
06_01_0332 - 2398683-2399316,2399933-2399983,2400455-2400528,240...    27   9.2  
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    27   9.2  

>09_02_0308 +
           7137099-7137132,7137495-7137611,7138252-7138319,
           7138413-7138538,7138650-7139619,7139641-7139737,
           7140026-7140113,7140336-7140396,7140425-7140447,
           7140663-7140776,7141193-7141306,7144731-7144825,
           7146506-7146824,7147166-7147309,7147463-7147564,
           7147868-7147971,7148121-7148247,7148804-7148845,
           7148939-7149091,7149326-7149426,7149807-7150227
          Length = 1139

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 242 HSPFWRDSSRFHQS 283
           H+P W++SSRFH S
Sbjct: 234 HTPSWQNSSRFHNS 247


>03_01_0368 + 2860640-2860855,2860959-2862203
          Length = 486

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 115 YQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDILDHYRT 243
           +  +  GC +S  +  L  + A ++ G ++ +   DI+D  +T
Sbjct: 67  HDCFANGCDASILIDPLSNQSAEKEAGPNISVKGYDIIDEIKT 109


>01_06_0515 -
           29959149-29959253,29959510-29959633,29959702-29959793,
           29959921-29960003,29960573-29960654,29960707-29960784,
           29960875-29960967,29961647-29961734,29961822-29961991
          Length = 304

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 264 ESLQKGECSVVVQNIAGYQLNRGTKFSCCSTLMQCRHC 151
           +  +K E  ++    A Y+     +  CC+ +  CRHC
Sbjct: 44  DDYEKLEEGIMQYGCAHYRRRCRIRAPCCNEIFDCRHC 81


>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
          Length = 767

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 112 IYQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDILDHYRTFALLERLLTVPSKLSE 291
           +YQ+     S SE +      GA +K  + +E I SDIL  Y+   L   ++T+ S L++
Sbjct: 330 VYQMKPLNKSDSENLFLTRTFGAEKKCPSQLEGIISDIL--YKCDGLPLAIITIASLLAD 387

Query: 292 Q 294
           +
Sbjct: 388 K 388


>10_02_0169 -
           6142199-6142581,6143015-6143095,6143313-6143691,
           6144019-6144372
          Length = 398

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 142 SSEAVSTLHQRGAARKLGASVELIASDILD 231
           S E V  +  RGA   LGASV ++  D+ D
Sbjct: 260 SVENVKAITTRGALCDLGASVSVMPKDVFD 289


>06_01_0332 -
           2398683-2399316,2399933-2399983,2400455-2400528,
           2400685-2400782,2400874-2400956,2401323-2401582
          Length = 399

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 82  VSNYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAARKLGA 198
           ++  T  D   Y  W++  SSS A  T H  G    +GA
Sbjct: 234 INAVTNFDLSTYIRWLKPPSSSSAAGTPHHHGGGMVVGA 272


>05_05_0156 +
           22792783-22793410,22797153-22797227,22797644-22798879,
           22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 23/106 (21%), Positives = 45/106 (42%)
 Frame = +1

Query: 88  NYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDILDHYRTFALLERLL 267
           N + + P I   W+E C    A   LH     +    +V +IA     H +T A+L+ L+
Sbjct: 188 NSSSVVPCILPPWLESCQIPSAAEELHSIMCNKNNIRNVLVIAD--AGHGKT-AILDSLV 244

Query: 268 TVPSKLSEQMIFQIDEPTKHMLLEKYYDLDDAVIRELLGRKLSSRH 405
                 S+++         + L+  YY++ +  +R    ++  + H
Sbjct: 245 ATAGITSQEV------TESNSLISLYYEMPEDSLRSYKDKRAGNGH 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,254
Number of Sequences: 37544
Number of extensions: 217646
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)