Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C19
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical ...    30   0.68 
AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic mul...    29   2.1  
AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell...    29   2.1  
AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical ...    27   8.3  
AC024200-16|AAF36003.1|  511|Caenorhabditis elegans Hypothetical...    27   8.3  

>AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical
           protein T05A8.4 protein.
          Length = 736

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = +1

Query: 175 GAARKLGASVELIASDILDHYRTFALLERLLTVPSKLSEQMIFQIDEPTKHMLLEKYY 348
           G   K  AS+E++ +D++  ++  +L +  +    K S++ +  ID+P  ++    +Y
Sbjct: 170 GHQMKPDASIEMLYADMVAKFKADSLFKATVQPDDKNSQRHVLLIDQPQLNLFARDFY 227


>AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic
           multivulva protein LIN-35 Rb protein.
          Length = 961

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +1

Query: 208 LIASDILDHYRT-FALLERLLTVPSKLSEQMIFQIDEPTKHMLLEKYYDLDDAVIRELLG 384
           +   D++ +Y+  F++L+++ T    + E ++  +++     LLE    +  A+  +  G
Sbjct: 295 MTVDDLISNYQLLFSILDQVYTEMCSMKEGIVHHLNQKFVEDLLENDCTIIRALCTQFGG 354

Query: 385 RKLSSRHRKD-LDQVSERSGAP 447
             L +RH  D   +  E++G P
Sbjct: 355 SVLDARHFSDHTFKKMEKTGIP 376


>AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell
           lineage protein 35 protein.
          Length = 961

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +1

Query: 208 LIASDILDHYRT-FALLERLLTVPSKLSEQMIFQIDEPTKHMLLEKYYDLDDAVIRELLG 384
           +   D++ +Y+  F++L+++ T    + E ++  +++     LLE    +  A+  +  G
Sbjct: 295 MTVDDLISNYQLLFSILDQVYTEMCSMKEGIVHHLNQKFVEDLLENDCTIIRALCTQFGG 354

Query: 385 RKLSSRHRKD-LDQVSERSGAP 447
             L +RH  D   +  E++G P
Sbjct: 355 SVLDARHFSDHTFKKMEKTGIP 376


>AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical
           protein D2063.4 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 311 MNQRNICYLKNTTT*MMLSSESFSAENCLRDIEK 412
           MN  N+ YL        L   S SAE CL D+ K
Sbjct: 184 MNDYNLWYLAGHPARTFLIDSSLSAEICLEDVFK 217


>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
           protein D2005.5 protein.
          Length = 1119

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 136 CSSSEAVSTLHQRGAAR-KLGASVELIASDILDHYRTFALL 255
           CSS  A+  + QRG AR K   SV L     ++   T AL+
Sbjct: 854 CSSGSAIQLVQQRGRARAKNSRSVLLSVKSSINETETNALI 894


>AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.6 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 110 KYTSYGLRDAHLVKQCLHCINVEQHEN 190
           KYT  G RD  L+   L C N +  ++
Sbjct: 296 KYTELGARDFQLIDTVLECFNEDDEDS 322


>AC024200-16|AAF36003.1|  511|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.2 protein.
          Length = 511

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 226 LDHYRTFALLERLLTV---PSKLSEQMIFQIDEPTKHMLLEKYYD 351
           ++HY+  + + RL +    P++L+  M  Q+DE    +   KYYD
Sbjct: 333 VEHYKNQSTILRLFSDEKNPTRLNADMRRQLDEIYSMLKASKYYD 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,305,129
Number of Sequences: 27780
Number of extensions: 202396
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)