Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C18
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 104 6e-24
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 97 1e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 55 5e-09
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 47 1e-06
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 30 0.16
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 1.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 2.7
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 25 3.5
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 4.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 4.7
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 4.7
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 4.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.1
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 24 8.1
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 24 8.1
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 24 8.1
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 24 8.1
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 104 bits (249), Expect = 6e-24
Identities = 45/64 (70%), Positives = 50/64 (78%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 277 HVPR 288
+VPR
Sbjct: 61 YVPR 64
Score = 80.6 bits (190), Expect = 9e-17
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P +++VDLEP V+D+VRTG YR LFHPEQLITGK+DA+NNYARG
Sbjct: 63 PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARG 106
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 97.1 bits (231), Expect = 1e-21
Identities = 49/69 (71%), Positives = 51/69 (73%), Gaps = 5/69 (7%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 261
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 262 TGAGKHVPR 288
TG GK VPR
Sbjct: 60 TGQGKFVPR 68
Score = 78.2 bits (184), Expect = 5e-16
Identities = 30/44 (68%), Positives = 40/44 (90%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P +++VDLEP V+D+VRTG Y+ LFHPEQ++TGK+DA+NNYARG
Sbjct: 67 PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARG 110
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 54.8 bits (126), Expect = 5e-09
Identities = 27/66 (40%), Positives = 39/66 (59%)
Frame = +1
Query: 100 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 279
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 280 VPRCRL 297
+PR L
Sbjct: 61 IPRAIL 66
Score = 43.2 bits (97), Expect = 2e-05
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKD--DAANNYARG 415
P A+ +DLEP VV+ + + TY L++PE ++ K+ A NN+A G
Sbjct: 62 PRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG 107
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 46.8 bits (106), Expect = 1e-06
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 277 HVPRCRL 297
+VPR L
Sbjct: 59 YVPRAVL 65
Score = 46.8 bits (106), Expect = 1e-06
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AV VDLEP +D V++G + LF P+ +I G+ A N +A+G
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKG 104
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 29.9 bits (64), Expect = 0.16
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 80 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 259
K LN V+ +A + S P+ +C + + + N + + TTP+T S
Sbjct: 82 KFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASEN 141
Query: 260 RPELASTFPD--AVFVD--LEPTV 319
+ + T PD +V+ D L PTV
Sbjct: 142 KKIESITIPDHASVYNDLPLSPTV 165
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.6 bits (56), Expect = 1.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 116 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELAST 280
++ A+ + S+ + S + Q +PSGVE T ++R++A+ + ST
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTEST 66
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 137 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELAST 280
S S + + + ST S+L ++PS T+ ST SSA P S+
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 218 PSGVETTPSTRSSARPELASTFPDAV 295
P+ VETTPST +SA P+ ST P A+
Sbjct: 350 PANVETTPSTATSA-PK-KSTAPFAI 373
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 3.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 261 DRSWQARSPMPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRMMP 395
D SW+A + +NP +R + H ++NN L R+MP
Sbjct: 239 DGSWEAIPLSRDQTGMNPDEASRLEVEHPGEEVLRNNRILGRLMP 283
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 226 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 131
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -3
Query: 347 CMCQCGPRQLQWVQDRRRRHRGTCLPAPVSLKNVLK 240
C+ P W+QD+ + + TCL ++ LK
Sbjct: 180 CLSLLQPNVDNWLQDKLKHYLTTCLCRETGVQGFLK 215
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 206 QLTRPSGVETTPSTRSSARPELASTFPDAV 295
Q T PSG +TPST + +L T+ A+
Sbjct: 117 QFTTPSGPVSTPSTYVATYNDLPCTYHRAI 146
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 4.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 255 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGL 127
EE EG TP +T+R D+V++ + AG++D+ S L
Sbjct: 320 EEISEGEEYTPIEESKEPITVRRDSVIQIDESSAGLTDVISEL 362
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 6.1
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +2
Query: 5 SAVMKPLNWSR*TTTD*FILSTLKFKKLNTKCVSASLYTLAKPESRSEMPAGSCIA---- 172
S V +P + TTT I +++K + S S+ + + + +S P S +
Sbjct: 434 STVTQPASTRVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSP 493
Query: 173 ---LSTASNLMVRCQLTRPSGVETTPSTRSS 256
LST+S ++ T SG PST SS
Sbjct: 494 QSTLSTSSEVVSEVSSTLLSGSSAIPSTSSS 524
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 24.2 bits (50), Expect = 8.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 86 LNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 259
LNT C+ + + + +E A S I+ TA NL+ C L+ P +P+ +++A
Sbjct: 132 LNTFCLGKTAPSDKNRYTTTECLACSKISNETAENLLFLC-LSSPWIFRASPTLQNTA 188
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 24.2 bits (50), Expect = 8.1
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 160 ELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETGAGKHVPRCRLRR 303
E+Y + +G+ D D + D F F G GK+VPR R RR
Sbjct: 67 EMYDM-YGMNSDSNSQFDGGVNLDDVLAQMFGMNFEAGGPGKNVPRDRKRR 116
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 8.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -2
Query: 255 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVY 115
E+ V GVV + + W L++ LD + + G+ D+ L ++
Sbjct: 399 EDSVIGVVGADNQISLWDLSVELDEEEQDSRAAEGLQDVPPQLMFIH 445
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 24.2 bits (50), Expect = 8.1
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +2
Query: 203 CQLTRPSGVETTPSTRSSARPELASTFPDAVFVDLEPTVVDEVRT 337
C ++RP +TP + +S P ++ P+ TV + T
Sbjct: 70 CMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTST 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,272
Number of Sequences: 5004
Number of extensions: 37291
Number of successful extensions: 125
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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