Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C18
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 142 1e-34
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 138 1e-33
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 124 3e-29
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 82 2e-16
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 55 2e-08
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 54 5e-08
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 54 5e-08
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 54 5e-08
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 53 8e-08
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 52 1e-07
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 51 3e-07
03_01_0034 + 318432-318825,318902-319851 51 3e-07
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 51 4e-07
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508... 31 0.36
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 30 0.84
01_01_0524 - 3845637-3845727,3845803-3845896,3846415-3846497,384... 30 0.84
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743... 29 1.5
01_05_0685 + 24273331-24273569,24275429-24275465,24275739-242758... 29 1.9
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 28 3.4
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 27 4.5
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 27 4.5
12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055 27 7.8
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 27 7.8
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598... 27 7.8
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 142 bits (343), Expect = 1e-34
Identities = 57/64 (89%), Positives = 63/64 (98%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 HVPR 288
HVPR
Sbjct: 61 HVPR 64
Score = 86.6 bits (205), Expect = 7e-18
Identities = 38/44 (86%), Positives = 42/44 (95%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AVFVDLEPTV+DEVRTG YRQLFHPEQLI+GK+DAANN+ARG
Sbjct: 63 PRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARG 106
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 138 bits (335), Expect = 1e-33
Identities = 55/64 (85%), Positives = 63/64 (98%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQ DGQMP+D+T+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPSDRTVGGGDDAFNTFFSETGAGK 60
Query: 277 HVPR 288
HVPR
Sbjct: 61 HVPR 64
Score = 86.2 bits (204), Expect = 9e-18
Identities = 38/44 (86%), Positives = 41/44 (93%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AVFVDLEPTV+DEVRTG YRQLFHPEQLI GK+DAANN+ARG
Sbjct: 63 PRAVFVDLEPTVIDEVRTGCYRQLFHPEQLINGKEDAANNFARG 106
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 124 bits (299), Expect = 3e-29
Identities = 50/64 (78%), Positives = 58/64 (90%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRE IS+H+GQAG+Q+GNACWELYCLEHGI+PDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 277 HVPR 288
HVPR
Sbjct: 61 HVPR 64
Score = 87.0 bits (206), Expect = 5e-18
Identities = 37/44 (84%), Positives = 43/44 (97%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P A+FVDLEPTV+DEVRTG+YRQLFHPEQLI+GK+DAANN+ARG
Sbjct: 63 PRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARG 106
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 81.8 bits (193), Expect = 2e-16
Identities = 41/77 (53%), Positives = 50/77 (64%)
Frame = +2
Query: 185 SNLMVRCQLTRPSGVETTPSTRSSARPELASTFPDAVFVDLEPTVVDEVRTGTYRQLFHP 364
S L + C T P G+ + P A+FVDLEPTV+DEV+TG YRQLFHP
Sbjct: 91 SYLTLACSDTTP-GIARDAFNTFFSETSSGKHVPRALFVDLEPTVIDEVKTGPYRQLFHP 149
Query: 365 EQLITGKDDAANNYARG 415
EQLI+ K+DAANN+ARG
Sbjct: 150 EQLISYKEDAANNFARG 166
Score = 81.4 bits (192), Expect = 3e-16
Identities = 31/39 (79%), Positives = 36/39 (92%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 213
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP D
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGLMPRD 39
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = +1
Query: 79 QKTQYKMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFS 258
+K + KMRE + + GQ G QIG+ WE+ C EHGI P G+ + + N +++
Sbjct: 175 KKGEEKMREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDL--QLERVNVYYN 232
Query: 259 ETGAGKHVPRCRL 297
E G+ VPR L
Sbjct: 233 EASCGRFVPRAVL 245
Score = 54.0 bits (124), Expect = 5e-08
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+G
Sbjct: 241 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKG 284
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 54.0 bits (124), Expect = 5e-08
Identities = 27/67 (40%), Positives = 35/67 (52%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRE + + GQ G QIG WE+ C EHG+ P G T + N +F+E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTY--TGTSPQQLERINVYFNEASGGR 58
Query: 277 HVPRCRL 297
HVPR L
Sbjct: 59 HVPRAVL 65
Score = 45.2 bits (102), Expect = 2e-05
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AV +DLEP +D +R+G +F P+ + G+ A NN+A+G
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPIGGIFRPDNFVFGQSGAGNNWAKG 104
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 54.0 bits (124), Expect = 5e-08
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+G
Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKG 104
Score = 51.2 bits (117), Expect = 3e-07
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRE + + GQ G QIG WE+ C EHGI P G+ + + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDL--QLERVNVYYNEASCGR 58
Query: 277 HVPRCRL 297
VPR L
Sbjct: 59 FVPRAVL 65
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 54.0 bits (124), Expect = 5e-08
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+G
Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKG 104
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 267
MRE + + GQ G QIG+ WE+ C EHGI P G + +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYVGTSDLQLERVNVYYNEAS 55
Query: 268 AGKHVPRCRL 297
G+ VPR L
Sbjct: 56 CGRFVPRAVL 65
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 53.2 bits (122), Expect = 8e-08
Identities = 28/66 (42%), Positives = 36/66 (54%)
Frame = +1
Query: 100 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 279
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHY 60
Query: 280 VPRCRL 297
+PR L
Sbjct: 61 IPRALL 66
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGK--DDAANNYARG 415
P A+ VDLEP V++ ++ YR L++ E + + A NN+A G
Sbjct: 62 PRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG 107
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 52.4 bits (120), Expect = 1e-07
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+G
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKG 104
Score = 51.2 bits (117), Expect = 3e-07
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRE + + GQ G QIG WE+ C EHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDL--QLERINVYYNEASGGR 58
Query: 277 HVPRCRL 297
+VPR L
Sbjct: 59 YVPRAVL 65
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 51.2 bits (117), Expect = 3e-07
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRE + + GQ G QIG WE+ C EHG+ G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDSDL--QLERINVYYNEASGGR 58
Query: 277 HVPRCRL 297
+VPR L
Sbjct: 59 YVPRAVL 65
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+G
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKG 104
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 51.2 bits (117), Expect = 3e-07
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRE + + GQ G QIG WE+ C EHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDL--QLERVNVYYNEASCGR 58
Query: 277 HVPRCRL 297
VPR L
Sbjct: 59 FVPRAVL 65
Score = 50.4 bits (115), Expect = 6e-07
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AV +DLEP +D VR+G Y +F P+ + G+ A NN+A+G
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKG 104
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +2
Query: 284 PDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKDDAANNYARG 415
P AV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+G
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKG 104
Score = 50.0 bits (114), Expect = 7e-07
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = +1
Query: 97 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 276
MRE + + GQ G QIG WE+ C EHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDL--QLERINVYYNEASGGR 58
Query: 277 HVPRCRL 297
VPR L
Sbjct: 59 FVPRAVL 65
>04_01_0383 +
5085697-5085724,5085816-5085927,5087249-5087285,
5087512-5087581,5087704-5087808,5088022-5088172,
5088257-5088339,5089152-5089372,5089465-5089501,
5089668-5089753
Length = 309
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 236 SSPPPMVLSVGI*PSGWMPCSRQYSSQ 156
S P P+ LS I SGW+PCSR S+
Sbjct: 147 SMPYPITLSAVISLSGWLPCSRTLRSK 173
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 29.9 bits (64), Expect = 0.84
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 152 PAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPDAVFVDLEPTVVDE- 328
P G+ I A L V+C VE TPS ++ P PD E +DE
Sbjct: 641 PKGTIIIQGNAK-LAVQCDKRSLDMVEQTPSPPATTEPPKKRFAPDRKQAIREE--LDEL 697
Query: 329 VRTGTYRQLFHPEQL 373
++ G R++ HPE L
Sbjct: 698 LKAGFIREVLHPEWL 712
>01_01_0524 -
3845637-3845727,3845803-3845896,3846415-3846497,
3846587-3846737,3847113-3847217,3847351-3847420,
3847551-3847587,3848155-3848257,3848441-3848480
Length = 257
Score = 29.9 bits (64), Expect = 0.84
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 233 SPPPMVLSVGI*PSGWMPCSRQYSSQ 156
+P P+ LSV + SGW+PC+R ++
Sbjct: 149 NPYPVNLSVSVGLSGWLPCARSLKNK 174
>05_07_0299 -
29073900-29073984,29074125-29074158,29074269-29074351,
29074457-29074607,29074853-29074957,29075099-29075168,
29075374-29075410,29076732-29076843,29076956-29076983
Length = 234
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 230 PPPMVLSVGI*PSGWMPCSR 171
P P+ LS I SGW+PCSR
Sbjct: 149 PYPITLSAVISLSGWLPCSR 168
>01_05_0685 +
24273331-24273569,24275429-24275465,24275739-24275808,
24275978-24276082,24276205-24276355,24276454-24276536,
24276619-24276712,24276796-24276883
Length = 288
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 224 PMVLSVGI*PSGWMPCSRQYSSQ 156
P+ LS I SGW+PCSR S+
Sbjct: 184 PVTLSAVIGLSGWLPCSRTLKSK 206
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.9 bits (59), Expect = 3.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 155 AGSCIALSTASNLMVRCQLTRP--SGVETTPSTRSSARPELASTFPDAVFVDLEPTVVDE 328
AG A +T L++ P S V SA EL + PD F DLE T +
Sbjct: 4 AGGLPASATLLLLVIAAVAVAPLASAVRPVSDAHRSAAAELFAASPDGSFGDLE-TTYEA 62
Query: 329 VRT 337
VRT
Sbjct: 63 VRT 65
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 27.5 bits (58), Expect = 4.5
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 104 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTF 283
S+S TLA+ E ++E+P G +S A+ L L + PS ++ ST
Sbjct: 532 SSSNETLAEREPKTEVPNGG--GISAAAPLSSDETLAEWNQKIKAPSGDEGNIGDVPSTS 589
Query: 284 PDAVFVDLE 310
PD + +D++
Sbjct: 590 PDIIVIDIK 598
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 193 DGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 288
DG++PTD G D N S+ A + P+
Sbjct: 343 DGELPTDAAAQGADVDLNLRISQPAASQQSPK 374
>12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055
Length = 178
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 242 STRSSARPELASTFPDAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKD 388
+TRS+A P A TF + PT V TGT + + + ++ +D
Sbjct: 39 ATRSAAAPYHAITFQAPPTAYVHPTPAANVETGTKLYISNLDYAVSNED 87
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 26.6 bits (56), Expect = 7.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 148 NACWELYCLEHGI 186
N CW+L C+EH +
Sbjct: 467 NLCWKLICMEHAV 479
>07_01_0776 +
5983684-5983857,5983962-5984072,5984151-5984302,
5984403-5984460,5984568-5984616,5984714-5984958,
5985129-5985206,5986016-5986246
Length = 365
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 240 GVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVYRDALTH 97
G + P+ + ++ I L + A+ +PAG + GLA RD + H
Sbjct: 215 GRAALPNATPNLNIGIDLWSTPPALAVPAGQGEASPGLALARRDGVAH 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,610,143
Number of Sequences: 37544
Number of extensions: 297550
Number of successful extensions: 1014
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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