Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C17
(433 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 2.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 2.8
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 25 5.0
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 6.6
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 25 6.6
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 25 6.6
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 6.6
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 24 8.7
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 24 8.7
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 24 8.7
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 319 RTLITRLWTF*CTQSQLTTRQRIPRILLTFYVTRIRC 429
R +T + CT S LT ILL FYV+ IRC
Sbjct: 253 RQYLTETFVKDCTSSILTASSDSSYILL-FYVSTIRC 288
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 2.8
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 273 KESELDSLRQTRFLWSYPNNPFMDILMHTVAVDYTPKNSQDSFDFLRDSY 422
K+SEL+ + R+ PN L+H +A P S F L Y
Sbjct: 292 KDSELNLINGRRYGLIAPNGSGKSTLLHAIACGLIPTPSSLDFYLLDREY 341
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 165 IPALESTRKGRILWPYPYVNYTEPSYIIKEDAS 263
IP ++ST+K +L N+T P +++E +S
Sbjct: 234 IPIIKSTKKEHMLSDLDVFNFTIPDDVVQELSS 266
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 195 RILWPYPYVNYTEPSYIIKEDASQN 269
RI WP ++YT+ Y++ S N
Sbjct: 17 RIYWPKSTISYTDSGYLVGWKYSTN 41
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 360 VAVDYTPKNSQDSFDFLRD 416
+A++Y+PK FDFLR+
Sbjct: 151 LAINYSPKTYTKIFDFLRN 169
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 150 VDYIEIPALESTRKGRILWPYPYVNYTEPSYIIKEDASQNPKESELDSL-RQTRFLWSYP 326
+D + P E +G P PY + ++ + ++ ED+S P E+ ++ R+ F +P
Sbjct: 24 IDLEKGPLPEHNSEGESTLP-PYSDISKLANLVPEDSSTGPTETANPNVERRQEFKDLHP 82
Query: 327 N 329
N
Sbjct: 83 N 83
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 6.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -3
Query: 170 WYFDIVNNIVSIIFY 126
WYF++VNN +++FY
Sbjct: 250 WYFELVNNF-NLLFY 263
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 75 QFILTSGYELEIDDFATVEDDA 140
+ +L ++E+DD +EDDA
Sbjct: 377 RLVLVQNKDMEVDDGGEIEDDA 398
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 204 WPYPYVNYTEPSYIIKEDASQNPKESELDSLRQTRFL 314
W Y + NY + + II E S+ +EL ++ F+
Sbjct: 1026 WRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFI 1062
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 194 AFSGTL*SWYFDIVNNIVSIIFYCSEIINL-QFISACQNKLSYNTYTHDFN 45
AF+G L +W D+V +C + NL +F+ + T H+FN
Sbjct: 1047 AFNGGLYAWEADLVPMFGRAKKFCGRMANLWRFVLDVTYPQAAYTTGHEFN 1097
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,731
Number of Sequences: 5004
Number of extensions: 34179
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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