Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C17
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 30 0.92
04_03_0743 + 19231835-19232204,19232889-19233061,19233200-192332... 30 0.92
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611... 29 2.1
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 29 2.1
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 29 2.1
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973... 28 3.7
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 28 3.7
08_02_1461 - 27299891-27301870 27 6.5
12_01_1079 - 11223247-11223336,11223606-11223717,11224743-112248... 27 8.6
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 29.9 bits (64), Expect = 0.92
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 252 EDASQNPKESELDSLRQTRFLWSYPNNPFM--DILMHTVAVDYTPKNSQDSFDFLRD 416
ED+ P + E+DS+ QT+ + S+ + I++H +++D P N+ + F + D
Sbjct: 1005 EDSYTAPCQLEVDSMAQTKEVPSFEISEVQGDGIVVHPISLDQEPSNAPNHFRKIPD 1061
>04_03_0743 +
19231835-19232204,19232889-19233061,19233200-19233297,
19233970-19234107,19234266-19234455,19234875-19235007,
19235095-19236029
Length = 678
Score = 29.9 bits (64), Expect = 0.92
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -3
Query: 314 QKACLSQTI*FTFFWILRCIFFNNVGRFCIIYIRIRPQYSAFSGTL*SWYFDIVNNIVSI 135
Q +CL + + +FFW FF+ VG C +AF T +YFD +
Sbjct: 216 QVSCLGKYLSISFFWNCFKWFFSGVGDSCGFDNFPSLGLAAFKNT---FYFDFSPTYIGC 272
Query: 134 IFYCSEIIN 108
C I+N
Sbjct: 273 GLICPHIVN 281
>12_02_0117 -
13860418-13860524,13860612-13860810,13860969-13861148,
13861230-13861375,13862185-13862323,13863076-13863153,
13863654-13863722,13863806-13863925,13864792-13864875,
13864961-13865032,13865204-13865345,13866016-13866023
Length = 447
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +3
Query: 18 TVSRKMKALIKVVSICIITQFILTSGYELEIDDFATVEDDADNVVDYIEIPALESTRKGR 197
T ++ L++ V + T + + Y++ +D F T + + VD I + ST GR
Sbjct: 47 TGDKEAHKLLQPVDKTLKTMALEFAEYQVCVDVFLTTQ----SYVDISSISVVPSTTGGR 102
Query: 198 ILWPYPYVNYTEPSYIIKE 254
+ YP+ ++P+ + +
Sbjct: 103 VYHYYPFSALSDPAKLFND 121
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/79 (21%), Positives = 39/79 (49%)
Frame = +3
Query: 18 TVSRKMKALIKVVSICIITQFILTSGYELEIDDFATVEDDADNVVDYIEIPALESTRKGR 197
T ++ L++ V + T + + Y++ +D F T + + VD I + +T GR
Sbjct: 381 TGDKEPHKLLQPVDKTLKTMALEFAEYQVCVDVFLTTQ----SYVDIASISVVPNTTGGR 436
Query: 198 ILWPYPYVNYTEPSYIIKE 254
+ + YP+ ++P+ + +
Sbjct: 437 VYYYYPFSARSDPAKLFND 455
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 234 VLYNLHKDTATIFGLFWYSLKLVF 163
+LYN +++ +F LFWY L F
Sbjct: 886 ILYNFYRNATFVFVLFWYVLNTGF 909
>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
9739708-9739831,9739927-9740635,9741826-9742132,
9742213-9743704
Length = 1108
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 234 VLYNLHKDTATIFGLFWYSLKLVF 163
+LYN +K+ + LFWY L F
Sbjct: 935 ILYNFYKNATFVLVLFWYVLYTAF 958
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 234 PSYIIKEDASQNPKESELDSLRQTRFLWSYPNNPFMDI 347
PS I++ D S N E + + +RF+ Y NN F I
Sbjct: 306 PSSIVRLDLSFNMFEGTIPLPQNSRFVLDYSNNRFSSI 343
>08_02_1461 - 27299891-27301870
Length = 659
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 45 IKVVSICIITQFILTSGYELEIDDFATVEDDADNVVDY 158
I +VSI ++ L GY E+D A DD D +
Sbjct: 397 IGIVSIVPARRWSLHDGYSTELDPVAAAADDLDTTSSF 434
>12_01_1079 -
11223247-11223336,11223606-11223717,11224743-11224825,
11226061-11226173,11226261-11226337,11228626-11228719,
11229072-11229160,11230485-11230560,11231637-11231808
Length = 301
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 275 FWILRCIFFNNVGRFC 228
FW L C ++NN R+C
Sbjct: 261 FWFLVCFYYNNQIRYC 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,269,768
Number of Sequences: 37544
Number of extensions: 184058
Number of successful extensions: 411
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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