Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C17
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z81077-7|CAB03070.2|  116|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U42832-2|AAA83572.1|  558|Caenorhabditis elegans Udp-glucuronosy...    27   5.8  
U41746-8|AAO25991.1|  430|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z99772-1|CAB16921.1|  794|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z75550-14|CAA99932.1|  794|Caenorhabditis elegans Hypothetical p...    27   7.7  
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...    27   7.7  

>U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical
           protein C30B5.5 protein.
          Length = 790

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 237 SYIIKEDA-SQNPKESELDSLRQTRFLWSYPNNPFMDILMHTVAVDYTPKNSQDSFDF 407
           SYI+   A + NP   ++ SL  T F+  +   PF+ +L+    + YT + S + +DF
Sbjct: 162 SYILLPSAMASNPIYQQVYSLWVTNFVMVF--FPFLTLLLFNAIIAYTIRQSLEKYDF 217


>Z81077-7|CAB03070.2|  116|Caenorhabditis elegans Hypothetical
           protein F36A2.8 protein.
          Length = 116

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 25/108 (23%), Positives = 44/108 (40%)
 Frame = +3

Query: 102 LEIDDFATVEDDADNVVDYIEIPALESTRKGRILWPYPYVNYTEPSYIIKEDASQNPKES 281
           + + D A V+ D   V  YI I   +++ K +      Y   +    I++E  S  P + 
Sbjct: 1   MPLADIADVDIDPKGVFKYILIQVTDNSTKQQKFVVRGYYRCSFHDDILQETKSSAPSDL 60

Query: 282 ELDSLRQTRFLWSYPNNPFMDILMHTVAVDYTPKNSQDSFDFLRDSYP 425
           +L  +   R           DIL++  +  Y   + Q + D L+  YP
Sbjct: 61  KLKCVGGGRIKHDEIGK---DILVYGYSYGYGRADHQIAVDILKQKYP 105


>U42832-2|AAA83572.1|  558|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein57 protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 210 YPYVNYTEPSYIIKEDASQNPKESEL-DSLRQTRFLWS--YPNNPFMDILMHTVAV 368
           Y + NY EP Y     +      S L DSL++     +  Y  NP ++ L H VAV
Sbjct: 100 YDFDNYLEPYYKAHNASCYKLLNSNLVDSLKKESLDLAIVYSGNPCLNALTHLVAV 155


>U41746-8|AAO25991.1|  430|Caenorhabditis elegans Hypothetical
           protein T18H9.7c protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 231 EPSYIIKEDASQNPKESELDSLR-QTRFLWSYPNNPFMDILMHTVAVDYTPKNSQDSFDF 407
           E S I K D S  P   +L ++  Q   +  +PNNP      ++   D+ P +S  + + 
Sbjct: 251 EESVISKTDGSSPPHSPQLRNVDGQELNMDFWPNNPVPQSSQYSYGSDFPPSSSNTTPNS 310

Query: 408 LRDS 419
            +D+
Sbjct: 311 KKDT 314


>U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical
           protein T18H9.7a protein.
          Length = 803

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 231 EPSYIIKEDASQNPKESELDSLR-QTRFLWSYPNNPFMDILMHTVAVDYTPKNSQDSFDF 407
           E S I K D S  P   +L ++  Q   +  +PNNP      ++   D+ P +S  + + 
Sbjct: 624 EESVISKTDGSSPPHSPQLRNVDGQELNMDFWPNNPVPQSSQYSYGSDFPPSSSNTTPNS 683

Query: 408 LRDS 419
            +D+
Sbjct: 684 KKDT 687


>Z99772-1|CAB16921.1|  794|Caenorhabditis elegans Hypothetical
           protein H05L14.1 protein.
          Length = 794

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 138 ADNVVDYIEIPALESTRKGRILWPYPYVNYTEPSYIIKEDASQNPKESELDS 293
           A + V  I +P  + T+KG  +     V  T+     KE+  +  K  E DS
Sbjct: 41  APSAVTPIPVPVSDPTKKGTTMSTMSQVKSTKSKNHKKEEKKKGSKNDEADS 92


>Z75550-14|CAA99932.1|  794|Caenorhabditis elegans Hypothetical
           protein H05L14.1 protein.
          Length = 794

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 138 ADNVVDYIEIPALESTRKGRILWPYPYVNYTEPSYIIKEDASQNPKESELDS 293
           A + V  I +P  + T+KG  +     V  T+     KE+  +  K  E DS
Sbjct: 41  APSAVTPIPVPVSDPTKKGTTMSTMSQVKSTKSKNHKKEEKKKGSKNDEADS 92


>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
           nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 186 RKGRILWPYPYVNYTEPSYIIKEDASQNPKESELDSLRQT 305
           R G++ WP P +N+  P+    +  S+N     L   R+T
Sbjct: 387 RDGQMKWPPPPINFPPPAAPKSDKPSENTALVPLTPFRKT 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,295,587
Number of Sequences: 27780
Number of extensions: 180747
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)