Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C16
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    44   1e-05
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    43   2e-05
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    33   0.032
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.2  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   2.1  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   2.1  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   8.4  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 22/55 (40%), Positives = 34/55 (61%)
 Frame = +1

Query: 331 DKNENGLMLGAELTHTLLALGEKLNDSEVAEITKDCMDPEDEDGMIPYAPFLKKV 495
           DK+ NG +   ELTH L +LGE+L+  EVA++ ++     D DG+I Y  F + +
Sbjct: 95  DKDGNGYITVEELTHVLTSLGERLSQEEVADMIREA--DTDGDGVINYEEFSRVI 147



 Score = 34.3 bits (75), Expect = 0.010
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +3

Query: 57  DLSKNDIERASFAFSIYDFEGKGKIDAYNLGDLLRALNSNPTLATV-XXXXXXXXXXXXX 233
           +L+   I     AFS++D +  G I +  LG ++R+L  +PT A +              
Sbjct: 5   NLTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGT 64

Query: 234 XXIEEFLPIYSQAKKDKDQGCYEDFLECLKLY 329
               EFL + ++  KD D    E+  E  K++
Sbjct: 65  IDFTEFLTMMARKMKDTDN--EEEVREAFKVF 94


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 24/79 (30%), Positives = 41/79 (51%)
 Frame = +3

Query: 93  AFSIYDFEGKGKIDAYNLGDLLRALNSNPTLATVXXXXXXXXXXXXXXXIEEFLPIYSQA 272
           AFS++D  G G+I   ++GDLLRA   NPTLA +               +E+FL + ++ 
Sbjct: 11  AFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEI---TEIESTLPAEVDMEQFLQVLNRP 67

Query: 273 KKDKDQGCYEDFLECLKLY 329
                 G  E+F++  +++
Sbjct: 68  NGFDMPGDPEEFVKGFQVF 86



 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +1

Query: 331 DKNENGLMLGAELTHTLLALGEKLNDSEVAEITKDCMDPEDEDGMIPYAPFLKKVL 498
           DK+  G++   EL + L +LGEKL++ E+ E+ K       +DGM+ Y  F++ +L
Sbjct: 87  DKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV---PVKDGMVNYHDFVQMIL 139


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 32.7 bits (71), Expect = 0.032
 Identities = 17/56 (30%), Positives = 33/56 (58%)
 Frame = +1

Query: 331 DKNENGLMLGAELTHTLLALGEKLNDSEVAEITKDCMDPEDEDGMIPYAPFLKKVL 498
           DK+ +G +  A+    +  LGEKL+D+EV  + ++  DP +  G   Y  F+++++
Sbjct: 88  DKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEA-DPTN-SGSFDYYDFVQRIM 141


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 60  LSKNDIERASFAFSIYDFEGKGKIDAYNLGDLLRALNSN 176
           + ++ +E    AF ++D +  GKI   NL  + + LN N
Sbjct: 104 VERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNEN 142


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 388 LGEKLNDSEVAEITKDCMDPED 453
           L EK+ D +   I  DC+DP+D
Sbjct: 777 LAEKVKDFQTMVILLDCLDPKD 798


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 51  MSDLSKNDIER-ASFAFSIYDFEGKGKID 134
           +++L   D+ R  SF F +YDF G G +D
Sbjct: 605 IAELKFRDVMRNISFIFELYDFNGDGFMD 633


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 247 SSFPSTVRPRKTKTRVAMRTS*NV*NCTDKNENGLMLGAELTHTLLALGEKLNDSEV 417
           +SFP    P+ TK    M  S +  + TDK+E+ L     L   +  L    N S +
Sbjct: 253 NSFPENRYPKLTKVEKQMTKSVSKTSQTDKDEDNLDFTKNLLTRIKNLHPLTNKSTI 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,536
Number of Sequences: 5004
Number of extensions: 36305
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)