Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C16
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 128 LAFALEIIDGEGEGCPFNVVLAEVAHFVW*S-LVPSRSSLAP 6
           LAF L    GE      N++L++   F+  S ++PS S   P
Sbjct: 255 LAFYLPADSGEKIALCINILLSQTMFFLLISEIIPSTSLALP 296


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 348 TIFVFVRTVSDILRSPH 298
           T+F  + T++ +L +PH
Sbjct: 535 TLFTIIATIAVLLSAPH 551


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 427 TKDCMDPEDEDGM 465
           TK+C++P D D +
Sbjct: 107 TKNCVNPYDRDSL 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,921
Number of Sequences: 438
Number of extensions: 2253
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)