Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C15
         (134 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072...    25   8.5  

>07_03_0312 +
           16606724-16606796,16606885-16607015,16607105-16607274,
           16607365-16607511,16608248-16608299,16608725-16608899,
           16609523-16609605,16610528-16610740,16611850-16611981,
           16612517-16612652,16613218-16613273,16613868-16613910,
           16613990-16614435
          Length = 618

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 128 SGSKNHSIHCVTDLPLYSSRRCIVYAFN 45
           S    H+ H   D+ +YS  RC   AF+
Sbjct: 301 SSCTGHADHLFMDIAVYSRNRCFRLAFS 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,534
Number of Sequences: 37544
Number of extensions: 20010
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 14,793,348
effective HSP length: 25
effective length of database: 13,854,748
effective search space used: 263240212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)