Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C15
         (134 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045638-2|AAC02560.1|  110|Caenorhabditis elegans Hypothetical ...    25   7.4  
AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AF045638-2|AAC02560.1|  110|Caenorhabditis elegans Hypothetical
           protein C35B1.4 protein.
          Length = 110

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 113 HSIHCVTDLP 84
           HSIHCVTD P
Sbjct: 15  HSIHCVTDPP 24


>AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical
           protein Y94A7B.8 protein.
          Length = 343

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 88  YLCIPLGVVSFTLSISFCL 32
           YL  P  ++++TLS++FC+
Sbjct: 130 YLRYPFLILNYTLSLAFCI 148


>AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical
           protein C45G7.4 protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 45  IESVNDTTPRGIQR*ICN 98
           IE++NDTT +G+QR + N
Sbjct: 338 IENMNDTTYQGLQRSVQN 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,170
Number of Sequences: 27780
Number of extensions: 20698
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 12,740,198
effective HSP length: 25
effective length of database: 12,045,698
effective search space used: 228868262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)