Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C14
         (441 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3; ...    36   0.29 
UniRef50_UPI0000499E3C Cluster: hypothetical protein 45.t00028; ...    33   3.6  
UniRef50_Q62097 Cluster: Mus musculus ORFs (putative primordial ...    33   3.6  

>UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3;
           n=40; Fungi/Metazoa group|Rep: Small nuclear
           ribonucleoprotein Sm D3 - Homo sapiens (Human)
          Length = 126

 Score = 36.3 bits (80), Expect = 0.29
 Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 13  LKNAPMFKRQGNKPT---AGRGKSAILRAQAA 99
           LKNAPM K   NK     AGRGK+AIL+AQ A
Sbjct: 77  LKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108


>UniRef50_UPI0000499E3C Cluster: hypothetical protein 45.t00028;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 45.t00028 - Entamoeba histolytica HM-1:IMSS
          Length = 671

 Score = 32.7 bits (71), Expect = 3.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 416 LTTVITRVCKVIESKLQHTKITKTVGIITCTHVSNTKTICIQPIYKLY 273
           LT++    CK  E  L H+K+ K +G+  C+ +S T  I   P+  +Y
Sbjct: 345 LTSLSLYQCKHFEIDLAHSKLLKKIGVCCCSEISLTAPI-TTPLCGIY 391


>UniRef50_Q62097 Cluster: Mus musculus ORFs (putative primordial
           protein), complete cds; n=6; Eukaryota|Rep: Mus musculus
           ORFs (putative primordial protein), complete cds - Mus
           musculus (Mouse)
          Length = 250

 Score = 32.7 bits (71), Expect = 3.6
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +2

Query: 179 CLTLYLILF*IKMMSRCMSMFYFDFYITK*VNITCIWAEYKLFS-YLKHVCMLLYL 343
           C+ L + L  + + S C+S+ Y   Y++  V ++ I+  Y ++  YL +VC+L+YL
Sbjct: 150 CIYLSIYLSYVCLSSICLSI-YLSIYLSY-VCLSSIYLSYAVYIIYLSYVCLLIYL 203


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,195,295
Number of Sequences: 1657284
Number of extensions: 6619685
Number of successful extensions: 14118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14106
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)