Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C14
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    26   3.0  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   3.0  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   3.9  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    25   5.2  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    24   9.0  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     24   9.0  

>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 193 VQCETANVAKDRIHPASCPYAPRLSRPVSPYQQLGLVILHSYRVLRSV 50
           ++  T++   D   P  CP A + S   S Y  +GL+I +  ++ R V
Sbjct: 1   MEFSTSSFIFDDDTPPKCPLATKASFIFSVYIIIGLIISYLLQIFRIV 48


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -3

Query: 400 HEFVRLLNPSYNTLKSPKQ*V**HAHMFQIRKQFVFSPYTSYI 272
           HEF R    S   L SP +    HA MF+   + V  PY SYI
Sbjct: 82  HEFTR----SVQELASPGEMR--HAQMFEFEFKHVDKPYESYI 118


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -3

Query: 295 FSPYTSYIHLFSYIKIKVKH*HTTRHH 215
           ++PYT  +   ++++  +K  +T+ HH
Sbjct: 26  YTPYTYIVSFHNFVRFPIKQRNTSIHH 52


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 124 LSRPVSPYQQLGLVILHSYRVLRSV 50
           LSR    Y+ L L++ HSY V+ ++
Sbjct: 34  LSRKREQYEDLALILWHSYGVMTAL 58


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 215 MMSRCMSMFYFDFYITK*VNITCIWAEYKLFSYLK 319
           + S C     FDFY  K  N    +A  KL +Y++
Sbjct: 73  LWSHCKEAHNFDFYQVKQQNNLDFYACIKLVNYIR 107


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 149 RVDPVLRDVSCLTLYLILF*IKMMSR-CMSMFYFDFYITK*VNITCIWAEYKLFSYLKHV 325
           R+D    D+  L L  ILF + +     + +FY  F +T+   +TC+     + ++L H 
Sbjct: 474 RIDSYEYDLDQLLLGTILFTVLIFFLPTIYVFYAAFALTRVSVMTCLAICETMLAFLNHF 533

Query: 326 CMLLYLL 346
            + + +L
Sbjct: 534 PLFVTML 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,182
Number of Sequences: 5004
Number of extensions: 30457
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)