Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C14
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741...    30   0.72 
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13...    30   0.72 
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    27   5.1  
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550...    27   5.1  
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791...    27   5.1  
05_01_0539 + 4653028-4653158,4654329-4654973,4655323-4655448,465...    27   8.8  

>03_02_0318 +
           7417361-7417519,7417638-7417690,7417770-7417836,
           7417925-7417981,7420005-7420067
          Length = 132

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 7/36 (19%)
 Frame = +1

Query: 13  LKNAPMFKR-------QGNKPTAGRGKSAILRAQAA 99
           LKNAPMFKR       +G+    GRG++  +RA+AA
Sbjct: 79  LKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARAA 114


>02_01_0022 -
           135655-135717,137426-137482,137559-137678,137762-137920
          Length = 132

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 7/36 (19%)
 Frame = +1

Query: 13  LKNAPMFKR-------QGNKPTAGRGKSAILRAQAA 99
           LKNAPMFKR       +G+    GRG++  +RA+AA
Sbjct: 79  LKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARAA 114


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 316 QIRKQFVFSPYTSYIHLFSYIKIKVKH 236
           Q++KQ V+SP T  ++L S IK  + H
Sbjct: 121 QMKKQIVYSPGTREMNLLSLIKPSLAH 147


>03_02_0080 +
           5498638-5498699,5499121-5499190,5499551-5500711,
           5500940-5501029,5501147-5501464
          Length = 566

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 398 RVCKVIESKLQHTKITKTVGIITCTHVSNTKTICIQPIYK-LYSLI*LYKNQSKTLTYNE 222
           +V KV++  L          I+   H++ T +I  +P++  LY  I +Y  +  +L  NE
Sbjct: 381 KVAKVVDGYLAEVAKDPNTPILKFIHLAETMSINSRPVHDGLYRAIDMYLKEHPSLGKNE 440


>02_05_1010 +
           33477878-33478446,33478709-33478834,33478905-33479190,
           33479293-33479484,33479641-33479870,33480379-33480718,
           33481673-33481789,33481940-33482014
          Length = 644

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 277 NLYMG*IQIVFVFETCVHVIIPTVLVILVCCNLDSI 384
           NLY   + IVF+  +C+   +P +L  ++CC L  I
Sbjct: 229 NLYR--LCIVFLTFSCIGYAMPFILCAMICCCLPCI 262


>05_01_0539 +
           4653028-4653158,4654329-4654973,4655323-4655448,
           4655537-4655813,4655916-4656143
          Length = 468

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 277 NLYMG*IQIVFVFETCVHVIIPTVLVILVCCNLDSI 384
           NLY   + I F+  +C+   +P +L  L+CC L  I
Sbjct: 298 NLYR--LCIAFLTFSCIGYAMPFILCALICCCLPCI 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,134,140
Number of Sequences: 37544
Number of extensions: 166223
Number of successful extensions: 359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)