Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C14
         (441 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15009-1|AAA57034.1|  126|Homo sapiens Sm D3 protein.                  36   0.047
CR456583-1|CAG30469.1|  126|Homo sapiens SNRPD3 protein.               36   0.047
BC003150-1|AAH03150.1|  126|Homo sapiens small nuclear ribonucle...    36   0.047
BC000457-1|AAH00457.1|  126|Homo sapiens small nuclear ribonucle...    36   0.047

>U15009-1|AAA57034.1|  126|Homo sapiens Sm D3 protein.
          Length = 126

 Score = 36.3 bits (80), Expect = 0.047
 Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 13  LKNAPMFKRQGNKPT---AGRGKSAILRAQAA 99
           LKNAPM K   NK     AGRGK+AIL+AQ A
Sbjct: 77  LKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108


>CR456583-1|CAG30469.1|  126|Homo sapiens SNRPD3 protein.
          Length = 126

 Score = 36.3 bits (80), Expect = 0.047
 Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 13  LKNAPMFKRQGNKPT---AGRGKSAILRAQAA 99
           LKNAPM K   NK     AGRGK+AIL+AQ A
Sbjct: 77  LKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108


>BC003150-1|AAH03150.1|  126|Homo sapiens small nuclear
           ribonucleoprotein D3 polypeptide 18kDa protein.
          Length = 126

 Score = 36.3 bits (80), Expect = 0.047
 Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 13  LKNAPMFKRQGNKPT---AGRGKSAILRAQAA 99
           LKNAPM K   NK     AGRGK+AIL+AQ A
Sbjct: 77  LKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108


>BC000457-1|AAH00457.1|  126|Homo sapiens small nuclear
           ribonucleoprotein D3 polypeptide 18kDa protein.
          Length = 126

 Score = 36.3 bits (80), Expect = 0.047
 Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 13  LKNAPMFKRQGNKPT---AGRGKSAILRAQAA 99
           LKNAPM K   NK     AGRGK+AIL+AQ A
Sbjct: 77  LKNAPMLKSMKNKNQGSGAGRGKAAILKAQVA 108


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,574,161
Number of Sequences: 237096
Number of extensions: 1023863
Number of successful extensions: 1502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)