Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C14
         (441 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p pro...    43   2e-04
AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclea...    43   2e-04
AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA...    43   2e-04

>AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p
           protein.
          Length = 151

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/31 (74%), Positives = 25/31 (80%), Gaps = 3/31 (9%)
 Frame = +1

Query: 13  LKNAPMFKRQGNKP---TAGRGKSAILRAQA 96
           LKNAPMFK+Q  K    TAGRGK+AILRAQA
Sbjct: 77  LKNAPMFKKQTGKGLGGTAGRGKAAILRAQA 107


>AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclear
           ribonucleoproteinSm D3 protein.
          Length = 151

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/31 (74%), Positives = 25/31 (80%), Gaps = 3/31 (9%)
 Frame = +1

Query: 13  LKNAPMFKRQGNKP---TAGRGKSAILRAQA 96
           LKNAPMFK+Q  K    TAGRGK+AILRAQA
Sbjct: 77  LKNAPMFKKQTGKGLGGTAGRGKAAILRAQA 107


>AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA
           protein.
          Length = 151

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/31 (74%), Positives = 25/31 (80%), Gaps = 3/31 (9%)
 Frame = +1

Query: 13  LKNAPMFKRQGNKP---TAGRGKSAILRAQA 96
           LKNAPMFK+Q  K    TAGRGK+AILRAQA
Sbjct: 77  LKNAPMFKKQTGKGLGGTAGRGKAAILRAQA 107


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,680,671
Number of Sequences: 53049
Number of extensions: 315275
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)