Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C14
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF548468-1|AAN40699.1|  485|Caenorhabditis elegans poly ADP-ribo...    27   6.0  
AC006662-4|AAF39896.2|  485|Caenorhabditis elegans Poly(adp-ribo...    27   6.0  

>Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.4 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 176 SCLTLYLILF*IKMMSRCMSMFYFDFYITK*VNITCIWAEYKLFS 310
           SC++L   LF + ++S CM+    D  + K +N TC++ E ++ S
Sbjct: 3   SCISLLKYLFCMSILSNCMADRAND--VQKALNETCVFNETEINS 45


>AF548468-1|AAN40699.1|  485|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme 4 protein.
          Length = 485

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 301 FVFSPYTSYIHLFSYIKIKVKH*HTTRHHLNLE*Y*VQCETANVAKDRIHPASCP 137
           +VFS YT Y +   + KI  K  H+ +++ +      + +T  VA D +  A  P
Sbjct: 303 YVFSSYTGYSNTLKWAKITPK--HSAQNNNSFRDQFGRLQTETVAIDAVRNAGTP 355


>AC006662-4|AAF39896.2|  485|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 4 protein.
          Length = 485

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 301 FVFSPYTSYIHLFSYIKIKVKH*HTTRHHLNLE*Y*VQCETANVAKDRIHPASCP 137
           +VFS YT Y +   + KI  K  H+ +++ +      + +T  VA D +  A  P
Sbjct: 303 YVFSSYTGYSNTLKWAKITPK--HSAQNNNSFRDQFGRLQTETVAIDAVRNAGTP 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,280,069
Number of Sequences: 27780
Number of extensions: 169836
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)