Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C13
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 93 3e-20
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 33 0.029
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 29 0.27
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 27 1.1
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 26 3.3
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 25 4.4
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 7.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.7
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 7.7
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 92.7 bits (220), Expect = 3e-20
Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Frame = +1
Query: 19 EKMTLKRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLLFAPF 198
EK+ + + ++ LL + M++ + ERDAH+ V EW DF+ L ++++ P+
Sbjct: 584 EKIPVPLNNLEKGVSDLLAKIQTNMYETAKAERDAHVVKVKEWADFVPALNKKNIVMIPW 643
Query: 199 CGEIPCEDSIKNDSAR-TEDDPTTDVKGPAMGAKSLCIPFKQP--RELTASDHCIHPSCK 369
C CE IK +SAR D D K P+MGAKSLCIP +QP + C
Sbjct: 644 CNTTECEKEIKKNSARQVNGDEPEDEKAPSMGAKSLCIPLEQPSGEDAIIEGTTKCAGCG 703
Query: 370 NKPKFITLFGRSY 408
N K LFGRSY
Sbjct: 704 NLAKVWGLFGRSY 716
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 32.7 bits (71), Expect = 0.029
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 34 KRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLL 186
K VN+ +LL RT+D + KERD L + EW+ R+E + LL
Sbjct: 652 KLQEKVNEHESLLSRTND-ILSTLRKERDEKLIPIHEWQQLQERIEHQTLL 701
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 29.5 bits (63), Expect = 0.27
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 89 RCFRSQQKNAMRIYRMSLS--GKISSHV*RQGIFCSRRSAGKYHAR 220
RC R + + Y++ LS G+ +SH+ R+G RSAG + R
Sbjct: 855 RCMRRYDRIRLNSYKLLLSSKGRSASHISRRGAASILRSAGYNYGR 900
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 232 NDSARTEDDPTTDVKGPAMGAKSLCIPFKQPRELTASDHCIHPSC 366
++S+ +D P KGPA + S + Q +L + H + +C
Sbjct: 36 SESSNVDDGPRLHCKGPACSSHSNDLAICQHNQLNVAPHLLKWTC 80
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 73 ERTHDQMFQKSTKERDAHLSHVTEWKDFIARL 168
+ H+ + KST+ D H H + W +F+ L
Sbjct: 302 QNVHEYLRAKSTETEDVHPFHDSIWLNFLVVL 333
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Frame = -3
Query: 404 LRPNNVMNF--GLFL--QDGWMQWSEAVS 330
LR N V+ GL++ +DGW QW++ ++
Sbjct: 425 LRKNQVITIEPGLYVPEEDGWPQWAQGIA 453
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 328 ELTASDHCIHPSCKNKPKFI--TLFGRSY*IVILD 426
+L + C H C N KFI T FGR + + + D
Sbjct: 169 KLLPKEKCEHLCCSNPMKFIISTNFGRLFSVQLRD 203
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 24.6 bits (51), Expect = 7.7
Identities = 22/90 (24%), Positives = 34/90 (37%)
Frame = +1
Query: 40 DAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLLFAPFCGEIPCE 219
D +N I + QKS+ + + + KD IA E L P C E+P
Sbjct: 837 DPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPV- 895
Query: 220 DSIKNDSARTEDDPTTDVKGPAMGAKSLCI 309
N + T D + V G G + + +
Sbjct: 896 ----NPNFNTRDGQSLVVLGELAGLQKIIL 921
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 18 RENDAKTRRGRQRHYRITREDTRPD 92
R+ + +R RQ RIT++D PD
Sbjct: 650 RQKQLEKKRRRQELERITQQDATPD 674
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,322
Number of Sequences: 5004
Number of extensions: 32463
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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