Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C13
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 59 2e-09
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205... 31 0.62
06_01_0303 + 2194345-2194414,2195228-2195328,2195818-2196657,219... 30 1.1
06_01_0278 - 2042574-2042612,2042738-2043055,2043150-2043296,204... 30 1.1
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 30 1.1
02_02_0505 - 11027899-11028981 28 3.3
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 28 4.4
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437... 28 4.4
11_06_0452 + 23774378-23775054,23775228-23775411,23775911-237759... 27 5.8
09_03_0093 + 12311123-12311446,12312260-12312624,12312735-123130... 27 7.6
04_01_0248 + 3254493-3254599,3258414-3258681,3260797-3261074,326... 27 7.6
03_05_0227 + 22133847-22133951,22134648-22135047,22135452-221355... 27 7.6
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 58.8 bits (136), Expect = 2e-09
Identities = 37/111 (33%), Positives = 53/111 (47%)
Frame = +1
Query: 16 GEKMTLKRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLLFAP 195
G K + V + LL+ +F+ + ++RDA L V W +FI L + L+ AP
Sbjct: 422 GAKADIPTADLVEKVNGLLDEVQKNLFETAKQKRDACLKVVNTWDEFIVALNDKKLILAP 481
Query: 196 FCGEIPCEDSIKNDSARTEDDPTTDVKGPAMGAKSLCIPFKQPRELTASDH 348
+C E E +K ART KG AK+LC PF+QP +L H
Sbjct: 482 WCDEEEVEKDVK---ART--------KGDLGAAKTLCTPFEQP-DLPEGQH 520
>06_01_0280 -
2056449-2056487,2056613-2056930,2057025-2057171,
2057273-2058112,2059044-2059117,2059515-2059647,
2059804-2059941
Length = 562
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 185 CSRRSAGKYHARTVSRTTAPGLKTIPLQT*KVQRWAPRACA 307
C RS YHAR + P L+++ L++ K +AP+ C+
Sbjct: 364 CMVRSGYVYHARAELPSIMPNLESLALKSCKETAFAPKLCS 404
>06_01_0303 +
2194345-2194414,2195228-2195328,2195818-2196657,
2196743-2196889,2196985-2197365
Length = 512
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 185 CSRRSAGKYHARTVSRTTAPGLKTIPLQT*KVQRWAPRACA 307
C RS YHAR + P L+++ +++ K +AP+ C+
Sbjct: 306 CMVRSGYVYHARAELPSIMPNLESLAMKSFKETAFAPKLCS 346
>06_01_0278 -
2042574-2042612,2042738-2043055,2043150-2043296,
2043382-2044221,2045182-2045282,2045666-2045791,
2047124-2047214
Length = 553
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 185 CSRRSAGKYHARTVSRTTAPGLKTIPLQT*KVQRWAPRACA 307
C RS YHAR + P L+++ +++ K +AP+ C+
Sbjct: 355 CMVRSGYVYHARAELPSIMPNLESLAIKSRKETAFAPKLCS 395
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +1
Query: 34 KRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLE 171
+RD A D+ + L + + + ++ ++ +AHL E K+ I++L+
Sbjct: 343 ERDKAAEDLKSALHKVNAEAQEEIKRQAEAHLRQQREQKEVISKLQ 388
>02_02_0505 - 11027899-11028981
Length = 360
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 217 EDSIKNDSARTEDDPTTDVKGPAMGAKSLCIPFKQPRELTA---SDHCIHPSCKNKPKFI 387
+D N+SA EDD +D P + + + ++ T D P+ N P+F
Sbjct: 48 DDGDDNESANGEDDEASDDGSPLDSSIQFVLNLRNAQQYTILRHHDQFRRPNDCNDPRFH 107
Query: 388 TLFGRS 405
T F +S
Sbjct: 108 TRFQKS 113
>02_04_0206 +
20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 214 CEDSIKNDSARTEDDPTTDVKGPAMGAKSLCIPFKQP--RELTASDHCIHPSCKNKP 378
CE ++N R DP +++ P ++ + + P R+LT+S H + C+N+P
Sbjct: 622 CE--VENTGTRRSCDPCAEIEFPLQQSREKHVISESPPERDLTSSSHNL--PCENEP 674
>02_01_0590 +
4376785-4377009,4378153-4378407,4378514-4378641,
4378738-4378779,4378875-4378956,4379035-4379103,
4379180-4379350,4379430-4379495,4379777-4379845,
4379928-4380056,4380845-4380881,4380906-4380997,
4381541-4381602,4381855-4381918
Length = 496
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 70 LERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLLFAPFCGEIPCEDSI 228
L T D+ F KS K+ A KD R A+HLL PF ++ ED++
Sbjct: 257 LHNTKDKKFSKSFKQMIA----TCLMKDPSKRPTAQHLLELPFFKKVKFEDNV 305
>11_06_0452 +
23774378-23775054,23775228-23775411,23775911-23775996,
23776116-23777010
Length = 613
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 435 FRLV*YNNLVASPKQCNELWLVFARRMDAV 346
F + YN ++++ + C+ WLV+ + +D V
Sbjct: 149 FSALFYNRVLSNGEHCDRDWLVYCKELDRV 178
>09_03_0093 +
12311123-12311446,12312260-12312624,12312735-12313004,
12313100-12313664
Length = 507
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -2
Query: 378 WLVFARRMDAVVRGGQFSGLFERNAQALGAHRW--TFHVCSGIVFSPGAVVLDTVLAWYF 205
WL + +++ G FS L + LG W FH+ + I + G +V + +F
Sbjct: 146 WLQLTSSIGSIIGG--FSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLVWLFAVDPHF 203
Query: 204 PA 199
PA
Sbjct: 204 PA 205
>04_01_0248 +
3254493-3254599,3258414-3258681,3260797-3261074,
3261708-3261711,3263037-3263118,3263196-3263220,
3263498-3263599,3264123-3264306,3264902-3265068,
3265233-3265866
Length = 616
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 417 NNLVASPKQCNELWLVFARRMDAVVRGGQFSGLFERNAQALGAH 286
+N+ A + N+LWL A + RGG +G+ AQ L H
Sbjct: 102 DNITAYALEDNKLWLRHALNLVFQARGGPSAGVVCILAQVLAEH 145
>03_05_0227 +
22133847-22133951,22134648-22135047,22135452-22135561,
22135869-22135955
Length = 233
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +1
Query: 118 DAHLSHVTEWKDFIARLEARHLLF--APFCGEIPCEDSIKNDSARTEDDPTTDVKGPAMG 291
D SH TE + + F + GE DSI N A +D P+T VK
Sbjct: 79 DPRFSHHTEHHPLVGGHDKASTTFHKSGSLGESKNADSISNSKAVKDDGPSTAVKDDGSS 138
Query: 292 AK 297
K
Sbjct: 139 VK 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,694,272
Number of Sequences: 37544
Number of extensions: 224390
Number of successful extensions: 629
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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