Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C13
(472 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna syn... 95 2e-20
AC024771-10|AAK70664.1| 433|Caenorhabditis elegans Hypothetical... 28 3.9
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 5.1
U40798-7|AAA81477.1| 342|Caenorhabditis elegans Hypothetical pr... 27 5.1
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 5.1
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr... 27 6.8
U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. 27 6.8
>U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform a protein.
Length = 581
Score = 95.1 bits (226), Expect = 2e-20
Identities = 50/131 (38%), Positives = 70/131 (53%)
Frame = +1
Query: 16 GEKMTLKRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTEWKDFIARLEARHLLFAP 195
GEK L + + +LL+ H M+ K +RD+HL T ++F L+ + ++ +P
Sbjct: 458 GEKKQLSLEGLSKTVKSLLDEIHTAMYNKVLAQRDSHLKSTTCIEEFKKLLDEKCIILSP 517
Query: 196 FCGEIPCEDSIKNDSARTEDDPTTDVKGPAMGAKSLCIPFKQPRELTASDHCIHPSCKNK 375
FCG CE+ IK S R D +G MGAK+LCIP QP++ S C+ PSC
Sbjct: 518 FCGRPDCEEEIKKASTR------EDGEGAQMGAKTLCIPLDQPKQELPS-KCLFPSCTYN 570
Query: 376 PKFITLFGRSY 408
K LFGRSY
Sbjct: 571 AKAFALFGRSY 581
>AC024771-10|AAK70664.1| 433|Caenorhabditis elegans Hypothetical
protein Y40B10A.9 protein.
Length = 433
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 112 ERDAHLSHVTEWKDFIARLEARHLLFAPFCGEIPCED 222
ER L H+ W R +AR F P ++ C D
Sbjct: 314 ERGLSLLHLAIWNSLFTRNKARESQFRPTASQVFCPD 350
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 24 NDAKTRRGRQRHYRITREDTRPDVSEVNKRTRCASIACH*VERFHRTFRGKASSVRAVLR 203
N A+ R R+T E T PD+ N++TR E FH +++ + + +R
Sbjct: 2591 NSAEDHRETVSFIRLTLEHTLPDMKTENEQTRFVEFLKE-AEGFHFSYKFVEAQCKTFVR 2649
Query: 204 GN 209
+
Sbjct: 2650 NH 2651
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 24 NDAKTRRGRQRHYRITREDTRPDVSEVNKRTRCASIACH*VERFHRTFRGKASSVRAVLR 203
N A+ R R+T E T PD+ N++TR E FH +++ + + +R
Sbjct: 2591 NSAEDHRETVSFIRLTLEHTLPDMKTENEQTRFVEFLKE-AEGFHFSYKFVEAQCKTFVR 2649
Query: 204 GN 209
+
Sbjct: 2650 NH 2651
>U40798-7|AAA81477.1| 342|Caenorhabditis elegans Hypothetical
protein R13A1.8 protein.
Length = 342
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 51 QRHYRITREDTRPDVSEVNKRTRCASIAC 137
+RHYR D P ++E N R CA I C
Sbjct: 259 ERHYR---PDITPHMTEENVRVFCAQIVC 284
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 24 NDAKTRRGRQRHYRITREDTRPDVSEVNKRTRCASIACH*VERFHRTFRGKASSVRAVLR 203
N A+ R R+T E T PD+ N++TR E FH +++ + + +R
Sbjct: 2591 NSAEDHRETVSFIRLTLEHTLPDMKTENEQTRFVEFLKE-AEGFHFSYKFVEAQCKTFVR 2649
Query: 204 GN 209
+
Sbjct: 2650 NH 2651
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 182 RCLASKRAMKSFHSVTCDRCASRSFVD 102
RCLA +RA VTCD+ R D
Sbjct: 817 RCLAEERACDEEQQVTCDQIRRRRMPD 843
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 182 RCLASKRAMKSFHSVTCDRCASRSFVD 102
RCLA +RA VTCD+ R D
Sbjct: 817 RCLAEERACDEEQQVTCDQIRRRRMPD 843
>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
protein F22B5.7 protein.
Length = 1415
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 10 FAGEKMTLKRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTE 144
F G+K R+AA+N + A + DQM++ + + D S V E
Sbjct: 816 FVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEE 860
>U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical
protein F20B4.4 protein.
Length = 210
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 15 GRENDAKTRRGRQRHYRITREDTRPDVSEVNKRTR 119
GR+++ ++RRGR H R + ++ + +TR
Sbjct: 43 GRQSNRRSRRGRPHHLRSPAATIKGTITRIVNKTR 77
>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
Length = 1415
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 10 FAGEKMTLKRDAAVNDITALLERTHDQMFQKSTKERDAHLSHVTE 144
F G+K R+AA+N + A + DQM++ + + D S V E
Sbjct: 816 FVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEE 860
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,906,473
Number of Sequences: 27780
Number of extensions: 192575
Number of successful extensions: 604
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -