Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C13
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 68  NAVMSLTAASRFSVIFSPANPR 3
           N +++ +A S F VIF  A+PR
Sbjct: 280 NNILAASACSLFVVIFHFAHPR 301


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 389 VMNFGLFLQDGWMQWSEAVSSLGCLN 312
           + +FG  ++D   +W+E  +S+G  N
Sbjct: 156 IESFGYTMRDIRYKWNEGPNSVGVSN 181


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 389 VMNFGLFLQDGWMQWSEAVSSLGCLN 312
           + +FG  ++D   +W+E  +S+G  N
Sbjct: 95  IESFGYTMRDIRYKWNEGPNSVGVSN 120


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 368 LQDGWMQWSEAVSSLGCLNG 309
           ++D W  + E V   GC  G
Sbjct: 391 MEDRWFTYQETVDPAGCNAG 410


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 82  HDQMFQKSTKERDAHLSHVTEWKDFI 159
           H  +    TK++      V EW+DF+
Sbjct: 257 HASLNHTLTKDQPETYELVKEWRDFV 282


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 225 TVLAWYFPAERREQKMPCL 169
           +VLA+Y PA+  E+   C+
Sbjct: 253 SVLAFYLPADSGEKIALCI 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,826
Number of Sequences: 438
Number of extensions: 2424
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)