Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C11
         (108 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0125 - 13096520-13097200,13098209-13098898                       26   5.0  
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047...    25   6.6  
07_03_0160 + 14556622-14556924                                         25   8.7  

>10_07_0125 - 13096520-13097200,13098209-13098898
          Length = 456

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 65  FNIFLVDARSLAGPPA 18
           F +FL DAR+L  PPA
Sbjct: 297 FAVFLADARALMSPPA 312


>08_02_1508 +
          27602104-27602265,27602398-27602449,27603357-27604757,
          27604833-27606140,27606594-27607435
          Length = 1254

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 42 CVYKENIEFNTLQD 83
          C+Y++NIEF T++D
Sbjct: 32 CLYEKNIEFETVKD 45


>07_03_0160 + 14556622-14556924
          Length = 100

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 22  GGPASDLASTRKILNLIH--YKIKHKL 96
           G PAS+LAST  ++   H  +K+K K+
Sbjct: 64  GRPASELASTMAVVGNQHMGFKVKEKI 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.131    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,762
Number of Sequences: 37544
Number of extensions: 24066
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 269660236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)