Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C11
         (108 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    25   5.4  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    25   5.4  
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.      25   5.4  
AL023841-1|CAA19511.1|  245|Caenorhabditis elegans Hypothetical ...    25   7.1  

>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
          protein F58E2.3 protein.
          Length = 688

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 37 DLASTRKILNLIHYKIKHKL 96
          DL  T+ I NLI +K+ HKL
Sbjct: 6  DLFPTKNIKNLIGFKLNHKL 25


>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 12   GPSGRTG*RPCVYKENIEFNTL 77
            GP   T  RPC+++EN   N L
Sbjct: 1869 GPEPYTVPRPCIFRENTPVNQL 1890


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 12   GPSGRTG*RPCVYKENIEFNTL 77
            GP   T  RPC+++EN   N L
Sbjct: 1869 GPEPYTVPRPCIFRENTPVNQL 1890


>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
           protein W02B9.1a protein.
          Length = 1223

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 12  GPSGRTG*RPCVYKENIEFNTL 77
           GP   T  RPC+++EN   N L
Sbjct: 172 GPEPYTVPRPCIFRENTPVNQL 193


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
            protein W02B9.1b protein.
          Length = 2920

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 12   GPSGRTG*RPCVYKENIEFNTL 77
            GP   T  RPC+++EN   N L
Sbjct: 1869 GPEPYTVPRPCIFRENTPVNQL 1890


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
            protein.
          Length = 2920

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 12   GPSGRTG*RPCVYKENIEFNTL 77
            GP   T  RPC+++EN   N L
Sbjct: 1869 GPEPYTVPRPCIFRENTPVNQL 1890


>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
          Length = 1223

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 12  GPSGRTG*RPCVYKENIEFNTL 77
           GP   T  RPC+++EN   N L
Sbjct: 172 GPEPYTVPRPCIFRENTPVNQL 193


>AL023841-1|CAA19511.1|  245|Caenorhabditis elegans Hypothetical
           protein Y43C5B.2 protein.
          Length = 245

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 10  EGQAGGPASDLASTRKILNLIHYKIKHKLVSSK 108
           E QAG P S++ S    +  +  +IKH ++ +K
Sbjct: 44  EPQAGSPRSNILSVMHCVPPMEEEIKHYVIKTK 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.131    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,994
Number of Sequences: 27780
Number of extensions: 17630
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 12,740,198
effective HSP length: 17
effective length of database: 12,267,938
effective search space used: 220822884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)