Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C09
         (133 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0227 - 14485676-14487316                                         30   0.23 
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800...    29   0.69 
06_03_0356 - 19826613-19826654,19827077-19827186,19827379-19827532     27   1.6  
02_02_0715 + 13230576-13230848                                         27   2.1  
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076...    26   4.9  
01_06_1743 + 39601644-39602023,39602301-39602734,39602828-396030...    25   8.5  

>08_02_0227 - 14485676-14487316
          Length = 546

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -3

Query: 122 RGES*RGKEREPGGLGDEIDTRRRASPHAHRLR 24
           R  S R KE  P G+G E  TRR    H H  R
Sbjct: 502 RSSSSREKEAHPAGVGAERPTRRPPPQHLHETR 534


>01_01_1010 -
           7996921-7997673,7999212-7999399,7999688-7999784,
           8000420-8000767,8001130-8001231,8001432-8001501,
           8001747-8001802,8001891-8002010
          Length = 577

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 17  LCSGDDARAATRGGECRSRLL 79
           L +GD A  ++RGG CR R+L
Sbjct: 280 LATGDTATTSSRGGGCRGRML 300


>06_03_0356 -
          19826613-19826654,19827077-19827186,19827379-19827532
          Length = 101

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 5  EGTVLCSGDDARAATRGGEC 64
          +G +L  GD+A+A T+ GEC
Sbjct: 11 KGVILRKGDEAQARTKKGEC 30


>02_02_0715 + 13230576-13230848
          Length = 90

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 104 GKEREPGGLGDEIDTRRRA 48
           G E E  G+GDE++TRR A
Sbjct: 49  GVESEKDGVGDELETRRMA 67


>12_02_0513 -
           19906147-19906271,19906470-19906791,19907091-19907695,
           19908569-19908617
          Length = 366

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 130 RWSEENHEGVKKGSRE 83
           RW EE+H+GV+ G  E
Sbjct: 81  RWREESHQGVQAGGVE 96


>01_06_1743 +
           39601644-39602023,39602301-39602734,39602828-39603006,
           39603636-39603716,39603828-39603914,39604000-39604006,
           39604241-39604312,39604712-39604792,39605156-39605262
          Length = 475

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 101 KEREPGGLGDEIDTRRRAS 45
           + R+PGG+GDEI  R   S
Sbjct: 127 RHRQPGGIGDEILQRASIS 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,454
Number of Sequences: 37544
Number of extensions: 42456
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 24
effective length of database: 13,892,292
effective search space used: 263953548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)