Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C08
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   7.1  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    24   9.4  

>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 316 ISLKYFLLISLSIFFYM*CKKIDSILKIKIGC*KCT*NK*LLYKNVNENYLSYVIIPLCE 137
           ISL++F + +   FF+    K  SI  I+I C   T N+  + K      + Y++I + +
Sbjct: 4   ISLQFFFVDNY--FFFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILIMIIQ 61

Query: 136 QL 131
            L
Sbjct: 62  HL 63


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 375 PRRLTDQTERKMFIL**CTVTI 440
           P RL D  ER++F+L  CT  +
Sbjct: 383 PGRLLDCLERRLFVLSQCTYVV 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,737,297
Number of Sequences: 5004
Number of extensions: 31839
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)