Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C08
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1044 - 21965237-21965341,21966130-21966300,21966414-219665...    27   7.0  

>04_03_1044 -
           21965237-21965341,21966130-21966300,21966414-21966564,
           21968768-21969348
          Length = 335

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 395 LIRQSSWSISCRRVRLVLGKSEIAFLNISKILFVNIIKHI 276
           L  Q  W+  CR    VLGK ++  L    +LF+ I+ H+
Sbjct: 295 LTLQDFWASWCRNTSSVLGKIQVLVL----LLFIPILLHV 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,394,588
Number of Sequences: 37544
Number of extensions: 146388
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)