Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C08
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like ...    27   4.8  
U29377-8|AAA68716.1|  218|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL132877-3|CAC70115.1|  256|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF298180-1|AAG10302.1|  256|Caenorhabditis elegans tropomyosin i...    27   8.3  

>AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like
           (grd related) protein29 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 18  KTIQVTLESKKLSKYKISCNSN 83
           KT+   LE+KKL ++ + C+ N
Sbjct: 124 KTVNAALENKKLQRFTVICSEN 145


>U29377-8|AAA68716.1|  218|Caenorhabditis elegans Hypothetical
           protein K05F1.9 protein.
          Length = 218

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 21  TIQVTLESKKLSKYKISCNSNQRFQVTS*LLYI 119
           ++ +T  +K    +KI C SNQ F++ S + YI
Sbjct: 41  SLNLTNPTKDRYAFKIKCTSNQLFKIKSPVGYI 73


>AL132877-3|CAC70115.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1c protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 301 SILEIFKKAISDFPNTNRTLRHEIDQDD*RIKQREKCL-SCNDVL 432
           S LE   KA  +   + R L ++ID DD R    E+ L  C  +L
Sbjct: 83  SKLEQATKAADEADRSRRALSNQIDMDDDRCSDLERKLRECQSIL 127


>AF298180-1|AAG10302.1|  256|Caenorhabditis elegans tropomyosin
           isoform IV protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 301 SILEIFKKAISDFPNTNRTLRHEIDQDD*RIKQREKCL-SCNDVL 432
           S LE   KA  +   + R L ++ID DD R    E+ L  C  +L
Sbjct: 83  SKLEQATKAADEADRSRRALSNQIDMDDDRCSDLERKLRECQSIL 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,288,924
Number of Sequences: 27780
Number of extensions: 167257
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)