Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C06
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.1  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   2.0  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    27   2.6  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    27   2.6  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   3.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   3.5  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    26   4.6  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   4.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   6.1  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.1  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    25   8.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 10   ALG--PRDERTPQPPAATPTHGAEVAAQPARQLQP 108
            ALG  PR + TP P          VAA  A+Q+QP
Sbjct: 1247 ALGIKPRQKGTPSPAPVNSATSTPVAAPTAQQIQP 1281


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 29  NAPRNLLQLPPHTEQRSPLSLLGNFNHMFDAKTRHEADKLYSDDIRT 169
           NAP ++ ++ P  E      L+  +  +F  K R  +DKL+   + T
Sbjct: 343 NAPFSVDEVEPGLEDGKDGILVREYTRLFTQKIREWSDKLFQSSVDT 389


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 305 VAVWRSVAEGNLLNVHRD-VGKLLELSRPHEEVEVFAGTHGVLSV 436
           V+VW    EG +++ H D +  +  +S   E   V     GVLSV
Sbjct: 129 VSVWDKRTEGGIIHTHNDHIDYISSISPFEERYFVATSGDGVLSV 173


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -3

Query: 574 TNGSFSRTIAVASSRRSVVYDGPNVPRHREPIPRLQVHALACVTRPHGEHAVCPREHLDL 395
           TN S S + AV   R+ ++ +   V +  + +    +HA A    P G   + P+E+++ 
Sbjct: 127 TNSSISAS-AVERERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIES 185

Query: 394 LVGSAQLQQL 365
           L     LQ +
Sbjct: 186 LTREDLLQYI 195


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 17  VHVTNAPRNLLQLPPHTEQRSPLSLLGNFNHMFDAK-TRHEADKLY 151
           V+    PR LL +   TE  S  S L NF+     K   H  +K+Y
Sbjct: 419 VNTVRTPRQLLNVKRPTEPASSNSSLNNFSGFSTKKDVLHAIEKVY 464


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 30/138 (21%), Positives = 43/138 (31%)
 Frame = +3

Query: 36  PATSCSYPHXXXXXXXXXXXXXXXXXXXXKPGTKPISSTPTTSERTGACERCSGTIGSRS 215
           P+ S SY                         T  I STP ++  TG+    +GT  S  
Sbjct: 582 PSASSSYEVASNSSDYYSQTVSSITASGTTSSTSEIVSTPASNSNTGS---LNGT--SSF 636

Query: 216 RDRHSPPRNS*AGGISTIRTCASQILSQTASPCGAASPKXXXXXXXXXXXXXWS*ADPTR 395
                 P +S     S+     SQ L +T+SP   +S                S    + 
Sbjct: 637 NVNSVGPSSSQTTPTSSSSITGSQSLKETSSPAYVSSTVSYTSSSVDSSSTYNSTGSSSS 696

Query: 396 RSRCSRGHTACSP*GRVT 449
            S+   G T   P   +T
Sbjct: 697 DSQSFSGTTYSDPTTTIT 714


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 467 LKAGNRFPVPRY-IWTVVHNRAARTRY 544
           L+ GNRF VP Y I+ V H+  A  +Y
Sbjct: 142 LEGGNRFDVPYYIIFRVFHDSFALYKY 168


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 34  TPQPPAATPTHGAEVAAQPARQLQ 105
           TP PP  T  H A    QP R ++
Sbjct: 331 TPAPPVKTSPHPASYRPQPTRNVE 354


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 322  AAPHGDAV*DKICDAHVLIVEIPPAQEFRGGECLSRERDPIV 197
            AAP G     ++ +A VLI EI P + F  G+ +   R PI+
Sbjct: 1271 AAP-GQLTVKQLNEARVLIGEILPEKFFLFGKPIKHSRSPIL 1311


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 134 EADKLYSDDIRTNRRLREMFRHDRISFAGQ 223
           + +   +  I+T R L++  RHD + F+G+
Sbjct: 830 QIEHFVNQQIQTIRSLKQELRHDFVQFSGK 859


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 302 RVAVWRSVAEGNLLNVHRDVGKLLELSRPHEEVEVFAGTHGVLSVRS--GHARKSVYLKA 475
           + A  + + E  +     ++G+ ++      EVE+   TH V S+R+  GH      +  
Sbjct: 229 KAATNKGIEEAGIDARLNEIGEAIQEVMESYEVEINGKTHQVKSIRNLCGHNLDPYIIHG 288

Query: 476 GNRFPV 493
           G   P+
Sbjct: 289 GKSVPI 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,265
Number of Sequences: 5004
Number of extensions: 41905
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)