Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C06
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 32 0.38
01_07_0382 + 43188478-43190919 31 0.67
04_03_0235 - 13111282-13111878 30 1.5
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 30 1.5
12_01_0135 + 1042889-1044255,1045368-1045809 29 2.7
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 29 3.6
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 29 3.6
01_01_0488 - 3597652-3598761,3599619-3600860 29 3.6
05_05_0222 - 23392577-23392952,23394212-23394304,23394773-23395146 28 4.7
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 28 4.7
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 28 6.2
05_06_0245 - 26651770-26652900 28 6.2
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 28 6.2
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 27 8.2
05_03_0454 - 14227447-14228040 27 8.2
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 27 8.2
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 27 8.2
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 200 DRISFAGQTLTSAKLLSRRYFDDQNMRVTDFVSNRVAVWRSVAEGNLLNVHRDVGKLLEL 379
D A Q + KL+ R ++ +FVS V W+ G +LN R +G L+
Sbjct: 258 DHAGIATQVVVEKKLMRERNLTRHDIGREEFVSE-VLKWKDEYGGTILNQLRRLGASLDW 316
Query: 380 SRPHEEVEV 406
SR + +E+
Sbjct: 317 SREVDYLEI 325
>01_07_0382 + 43188478-43190919
Length = 813
Score = 31.1 bits (67), Expect = 0.67
Identities = 21/82 (25%), Positives = 33/82 (40%)
Frame = +1
Query: 43 PPAATPTHGAEVAAQPARQLQPHVRRENQARSR*ALLRRHQNEQAPARDVQARSDLVRGT 222
PP P A +A QLQ H+ + +R+ H +Q P+ DV+ +DL+R
Sbjct: 45 PPLQPPRASASASASLLLQLQDHIASGHLSRA------HHLFDQIPSPDVRTYNDLIRAY 98
Query: 223 DTHLRETLEQAVFRRSEHARHR 288
+ + RHR
Sbjct: 99 SSSSPTAAADGLHLYRRMLRHR 120
>04_03_0235 - 13111282-13111878
Length = 198
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 508 PNVPRHREPIPRLQVHALACVTRPHGEHAVCPREHLDLLVGS 383
P P+H P+P A+A + RPH + R H +GS
Sbjct: 2 PFPPQHPPPLPAAAAAAVARLRRPHRRRFLASRPHSSHRLGS 43
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = +1
Query: 4 RGALGPRDERTPQPPAATPTHGAEVAAQPARQLQPHVRRENQARSR*ALLRRHQNEQAPA 183
R + P +ER P PP A P + V +RQ P +EN + A + + APA
Sbjct: 112 RENMAPPEERAPPPPPAPPPKSSHVVVF-SRQADP-TEKENVSHGGIATMSCPIKKAAPA 169
Query: 184 RDVQARSDLVRG 219
A L G
Sbjct: 170 LPAPAARKLSLG 181
>12_01_0135 + 1042889-1044255,1045368-1045809
Length = 602
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 19 PRDERTPQPPAATPTHGAEVAAQPARQLQPHVRRENQARSR 141
P ++P+PP A T A AA A R+E Q R +
Sbjct: 186 PNQPQSPKPPTAEETAAAAAAAAAAAAAAAKERKEEQRRKQ 226
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 463 HALACVTRPH--GEHAVCPREHLDLLVGSAQLQQ 368
H L+ VT P G+ + PRE LDL +G + Q+
Sbjct: 609 HYLSSVTCPSIKGDRLIIPRESLDLAIGRLKAQE 642
>01_01_0571 -
4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 1 ARGALGPRDERTPQPPAATPTHGAEVAAQPARQLQPHVRRENQARSR*ALLRRHQNEQA 177
A G G ER P+PPAA+ E +P RQ Q Q R + A RH ++A
Sbjct: 24 AAGEEGATPERPPRPPAASVAGIMERLVRPPRQQQ-------QGRDQDASQARHVEQRA 75
>01_01_0488 - 3597652-3598761,3599619-3600860
Length = 783
Score = 28.7 bits (61), Expect = 3.6
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 358 VPVHVQEVPFGDAAPHGDAV*DKICDAHVLIVEIPPAQEFRGGECLSRERDPIVPEHLSQ 179
VPV + P HG D+ V VE Q R E + +P E L
Sbjct: 626 VPVTARASPADVEWSHGGGGGDRFA---VYFVEARKLQLLRRDESVELTLEPFTYELLVV 682
Query: 178 APVRSDVVGVEL-IGFVP 128
APVR+ +V EL IGF P
Sbjct: 683 APVRA-IVSPELGIGFAP 699
>05_05_0222 - 23392577-23392952,23394212-23394304,23394773-23395146
Length = 280
Score = 28.3 bits (60), Expect = 4.7
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +1
Query: 19 PRDERTPQPPAATPTHGAEVAAQPARQLQPHVRRENQARSR*ALLRRHQNEQAPARDVQA 198
P+ ER+P PP P + A Q E S A Q E P R++
Sbjct: 6 PKSERSPSPPPPPPGDQRDAAIQ-----------ELSKGSELATQLMAQLELIPERELDG 54
Query: 199 RSDLVRGTDTHLRETLEQAVFR-RSEHARHRFC 294
R D L +L +++ RSE H +C
Sbjct: 55 RRDDALANVRSLSMSLSSSLYALRSERREHYYC 87
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 4 RGALGPRDERTPQPPAATPTHGAEVAAQPARQ 99
R A G R P PP + P HGA AQP Q
Sbjct: 244 RRASGSSLRRAPPPPTS-PRHGASDPAQPRHQ 274
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +1
Query: 37 PQPPAATPTHGAEVAAQPARQLQPHVRRENQARSR*ALLRRHQNEQAPA 183
P P A P G A QPA + P + R + R N APA
Sbjct: 553 PAPATARPGGGGGGAEQPAARAPPFLANPGGEREPLSAARSRNNPAAPA 601
>05_06_0245 - 26651770-26652900
Length = 376
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +1
Query: 31 RTPQPPAATPTHGAEVAAQPARQLQPHVRRENQARSR*ALLRRHQNEQAPARDVQARSD 207
R+ PAA P AA R VRR R+ ++ E A A D A D
Sbjct: 165 RSRSEPAAAPAQEERKAASRLRNSSSEVRRAEVVRAPARVVEAFPEEAAAAVDATAEDD 223
>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 138 PISSTPTTSERTGACERCSGTIGSRSRDRHSPPRNS 245
P+S P E T CE+ GT S R SP ++S
Sbjct: 896 PLSHDPQKLEATQKCEQEGGTRNHSSMKRPSPEKSS 931
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 99 LPSRLSGDLCSVCGGSCRRLRGAFVTWTQSASC 1
LP+ DL V +CR+ + F++W+ S SC
Sbjct: 92 LPADAVYDLDFVSDDNCRKSKIFFISWSPSLSC 124
>05_03_0454 - 14227447-14228040
Length = 197
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 37 PQPPAATPTHGAEVAAQPARQLQPHVRRENQARSR*ALLRR 159
P PP++ T A A PA +QP + ++ R+ LRR
Sbjct: 4 PPPPSSVLTASAAAARPPASVVQPQRQAAHRRRAETLRLRR 44
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 405 CSRGHTACSP*GRVTHARACT*RRGIGSRCRGTFGPSYTTERRELATAIVL 557
C G TA SP + RRG+ C G G S TT++ ++ + L
Sbjct: 329 CVDGFTAASPSAWALRNTSGGCRRGVALDCAGGGGGSRTTDKFKVVRGVKL 379
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -3
Query: 409 EH-LDLLVGSAQLQQLAYVPVHVQEVPFGDAAPH---GDAV*DKICDAHVLIVEIPPAQE 242
EH +DLL A L+ L +P H E + P GDA +K D + + + P +
Sbjct: 781 EHGVDLLKSEASLEYLCNLPPHRYEAVYARDIPEIITGDAFLEKYGDHNDAVTTVDPKRS 840
Query: 241 F 239
+
Sbjct: 841 Y 841
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,379
Number of Sequences: 37544
Number of extensions: 359528
Number of successful extensions: 1441
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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