Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C06
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    31   0.45 
Z79759-5|CAB02140.2|  409|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AC024853-3|ABP57809.1|  244|Caenorhabditis elegans Hypothetical ...    30   1.4  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68493-12|CAD89734.1|  121|Caenorhabditis elegans Hypothetical p...    29   3.2  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    29   3.2  
Z70308-11|CAA94343.4|  378|Caenorhabditis elegans Hypothetical p...    28   5.6  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    28   5.6  
U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional gl...    27   7.4  
AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacti...    27   7.4  
AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacti...    27   7.4  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   9.7  
U40061-5|AAY43979.1|  312|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 28  ERTPQPPAA--TPTHGAEVAAQPARQLQPHVRRENQARSR*ALLRRHQNEQAPARDVQ 195
           +R P PPA    P      +AQ  +Q +   +RE Q R   A L++HQ +Q   +  Q
Sbjct: 200 QRVPAPPAQQYAPRAPEYPSAQQQQQQREQQQREQQHREHQARLQQHQQQQQQQQQQQ 257


>Z79759-5|CAB02140.2|  409|Caenorhabditis elegans Hypothetical
           protein ZK858.5 protein.
          Length = 409

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
 Frame = -3

Query: 580 TATN-GSFSRTIAVASSRRSVVYDGPNVPRHREPIPRLQVHALACVTRPHGE-------- 428
           TAT  G+F  TI+V S  R  ++D   V    E  P ++ H+ + +   +GE        
Sbjct: 238 TATRPGTFRETISVGSLIRDRIFDAKKVHSFFEGNPIIEYHSKSDIKNKNGEKTLKNSSF 297

Query: 427 -HAVCPREHLDLLVGSAQLQQLAYV 356
            + V   E  D L G+A L ++ ++
Sbjct: 298 WYQVWSGELFDELTGAAHLTKIDWI 322


>AC024853-3|ABP57809.1|  244|Caenorhabditis elegans Hypothetical
           protein Y71F9AR.2 protein.
          Length = 244

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 430 EHAVCPREHLDLLVGS 383
           EH +CPREH  LLVG+
Sbjct: 108 EHVLCPREHRTLLVGN 123


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 542  SEFSPLCCVRRSKCTSAPGTYS 477
            +E +  CC   +KC + PGTYS
Sbjct: 1497 TEHNSTCCGANAKCVNKPGTYS 1518


>Z68493-12|CAD89734.1|  121|Caenorhabditis elegans Hypothetical
           protein C33A12.19 protein.
          Length = 121

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 17  VHVTNAPRNLLQLPPHTEQRSPLSLLGNFNHMFDAKTRHEADKLYSDDI 163
           V + + P NLL    + + R+  + + N+NH+     R+  D  Y D I
Sbjct: 19  VEIESRPNNLLDA--YFKHRAAHNSINNYNHLLKTSGRNHVDLDYDDTI 65


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 177 ACERCSGTIGSRSRDRHSPPRNS*AGGISTIRTCASQ 287
           AC    G  GSR R R  PP N+ +G     + C +Q
Sbjct: 501 ACSATCGACGSRMRTRTCPPGNACSGEPVETQICNTQ 537


>Z70308-11|CAA94343.4|  378|Caenorhabditis elegans Hypothetical
           protein F49E11.2 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 448 VTRPHGEHAVCPREHLDLLVGSAQLQQLAY 359
           VTRP+G  ++C    L L+VG   +  + Y
Sbjct: 138 VTRPYGFQSICSIRRLSLIVGFTWILSIMY 167


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
           protein Y111B2A.14 protein.
          Length = 1481

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 19  PRDERTPQPPAATPTHGAEVAAQPARQLQPHVRRENQA 132
           P   +   PPA  PT   E+  +P +  +P  +R+  A
Sbjct: 214 PAPRKPSPPPAVEPTRSVEIIEKPEKTEKPAEKRKTAA 251


>U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional
           glyoxylate cycle proteinprotein.
          Length = 1005

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +2

Query: 134 EADKLYSDDIRTNRRLREMFRHDRISFAGQTLTSAKLLSRRYFDDQNMRVTDFVSNRVAV 313
           E + L SD       +    +  R+   G T    K++        N+ + DF  +    
Sbjct: 542 ETEVLRSDQGWKGAEIPRDLQDRRVEITGPT--DRKMVINAMNSGANVFMADFEDSNSPT 599

Query: 314 WRSVAEGNLLNVHRDVGKLLELSRPHEEVE-VFAGTHGVLSVR 439
           WR+  EG  +N++  V   +  + P  + E      H VL VR
Sbjct: 600 WRNQLEGQ-INLYDAVRNNISYTHPTTKKEYTLNEKHAVLKVR 641


>AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacting
           protein protein7, isoform b protein.
          Length = 863

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +2

Query: 134 EADKLYSDDIRTNRRLREMFRHDRISFAGQTLTSAKLLSRRYFDDQNMRVTDFVSNRVAV 313
           E + L SD       +    +  R+   G T    K++        N+ + DF  +    
Sbjct: 502 ETEVLRSDQGWKGAEIPRDLQDRRVEITGPT--DRKMVINAMNSGANVFMADFEDSNSPT 559

Query: 314 WRSVAEGNLLNVHRDVGKLLELSRPHEEVE-VFAGTHGVLSVR 439
           WR+  EG  +N++  V   +  + P  + E      H VL VR
Sbjct: 560 WRNQLEGQ-INLYDAVRNNISYTHPTTKKEYTLNEKHAVLKVR 601


>AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacting
           protein protein7, isoform a protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +2

Query: 134 EADKLYSDDIRTNRRLREMFRHDRISFAGQTLTSAKLLSRRYFDDQNMRVTDFVSNRVAV 313
           E + L SD       +    +  R+   G T    K++        N+ + DF  +    
Sbjct: 502 ETEVLRSDQGWKGAEIPRDLQDRRVEITGPT--DRKMVINAMNSGANVFMADFEDSNSPT 559

Query: 314 WRSVAEGNLLNVHRDVGKLLELSRPHEEVE-VFAGTHGVLSVR 439
           WR+  EG  +N++  V   +  + P  + E      H VL VR
Sbjct: 560 WRNQLEGQ-INLYDAVRNNISYTHPTTKKEYTLNEKHAVLKVR 601


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 138 PISSTPTTSERTGACERCSGTIGS 209
           P+S TP T   TGA  R  GT GS
Sbjct: 515 PLSDTPITMTSTGAMLRFRGTQGS 538


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 138 PISSTPTTSERTGACERCSGTIGS 209
           P+S TP T   TGA  R  GT GS
Sbjct: 515 PLSDTPITMTSTGAMLRFRGTQGS 538


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 102 KLPSRLSGDLCSVCGG---SCRRLRGAF 28
           +L S L  D C VCGG   SC+ ++G F
Sbjct: 748 QLHSTLRRDKCGVCGGDDSSCKVVKGTF 775


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 102 KLPSRLSGDLCSVCGG---SCRRLRGAF 28
           +L S L  D C VCGG   SC+ ++G F
Sbjct: 748 QLHSTLRRDKCGVCGGDDSSCKVVKGTF 775


>U40061-5|AAY43979.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK563.7 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 161 IRTNRRLREMFRHDRISFAGQTLTSAKLLSRRYFDDQNMRVTDFVSNRVAVWRSV 325
           IR N+       H+  +F G+ L   ++  R    +  MRV D++S  V + R+V
Sbjct: 114 IRNNKLYLGSSGHELRTFTGEYLNDDEMYIRVISGNGGMRVEDWISRFVKLRRAV 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,999
Number of Sequences: 27780
Number of extensions: 266832
Number of successful extensions: 1061
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)