Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C06
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   1.7  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   2.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.9  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 56  PPHTEQRSPLSLLGNFNHMFDAKTRHEADKLY 151
           P      +PLS   N+N+ ++   +H  +KLY
Sbjct: 79  PKIISNNNPLSNNYNYNNNYNNYNKHNYNKLY 110


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 393 RRSRCSRGHTACSP*GRVTHARACT*RRGIGSRC 494
           R+ +C+ G   C P GR   + A    RG   +C
Sbjct: 50  RQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQC 83


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 393 RRSRCSRGHTACSP*GRVTHARACT*RRGIGSRC 494
           R+ +C+ G   C P GR   + A    RG   +C
Sbjct: 50  RQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQC 83


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/56 (23%), Positives = 20/56 (35%)
 Frame = +1

Query: 40  QPPAATPTHGAEVAAQPARQLQPHVRRENQARSR*ALLRRHQNEQAPARDVQARSD 207
           QPP     H      Q   Q QP  +++ Q +      ++ Q +Q   R      D
Sbjct: 808 QPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDD 863


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 138 PISSTPTTSERTGACERCSGTIGSRSR 218
           P++ TP+    +  C++     GS SR
Sbjct: 566 PLARTPSVMSASSTCKKDKKNAGSGSR 592


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 481 IPRLQVHALACVTRPHGEH 425
           IP+LQ+     V  PH +H
Sbjct: 605 IPKLQIALSEFVINPHQQH 623


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -3

Query: 580 TATNGSFSRTIAVASSRRSVVYDGPNVPRHREPIPRLQVHALACVTRPH 434
           T  N +        ++R+SVV+   N   H   + R ++  L     PH
Sbjct: 99  TKLNNAVEEKRPELTNRKSVVFHHDNARPHTSLVTRQKLLELGWDVLPH 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,198
Number of Sequences: 438
Number of extensions: 3439
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)