Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C04
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   1.8  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   1.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   5.5  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    23   9.6  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 162 RCIWRKQTQCEIRAWRTERSC*NFRRSS 245
           RCIWRK  +C   A+ +ER+   FR  S
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSES 189


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 109 ANEDEGKLELFSGVVIEKDASGENK 183
           +  D+G L+LF    +EK+  G+N+
Sbjct: 55  SENDDGTLDLFGDSELEKEQKGDNQ 79


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 50   CVYCVWYYA 76
            C +C WYYA
Sbjct: 1166 CTFCCWYYA 1174


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 202 PGELREAARTFEEARGKLKTYTPF 273
           PG L+E       A+G LK+Y+ F
Sbjct: 32  PGALQELKEHTNPAKGILKSYSSF 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,618
Number of Sequences: 5004
Number of extensions: 19082
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)