Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C04
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138 28 1.6
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 26 4.7
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239 26 4.7
11_06_0512 - 24460391-24462337 26 6.3
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 26 6.3
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 26 6.3
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 26 6.3
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984... 25 8.3
04_04_0311 - 24309411-24309525,24309627-24309841 25 8.3
>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
Length = 244
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 133 PVSLHLHSPPLVQPCKLPPCIIPNTIHAFS 44
PV PP+ Q C PC P++ FS
Sbjct: 50 PVCFEPFKPPIFQACSYEPCFCPDSGCGFS 79
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 223 QLLSVRQARISH*VCFRQMHLSQ*QHQRIAPVSLHLHSPPLVQPCKLPP 77
QLL +Q + H +Q+H Q Q Q++ PV S Q K+ P
Sbjct: 535 QLLQQQQPHVQHQQIPQQLHHQQQQTQQLQPVQQVQQSVQEHQQIKIQP 583
>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
Length = 569
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 142 RIAPVSLHLHSPPLVQPCKLPP 77
R++P+ L +PPL P LPP
Sbjct: 106 RVSPIDLDDSAPPLPLPLPLPP 127
>11_06_0512 - 24460391-24462337
Length = 648
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 172 GENKLNVK--FEP-GELREAARTFEEARGKLKTYTPFLAGVGVKV 297
GEN+ + F+P EL + A G++ T P LAGVGV++
Sbjct: 72 GENERRIVHLFDPIEELVDDVLNSLAAGGEISTLQPKLAGVGVQI 116
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 165 CIWRKQTQCEIRAWRTERSC*NFRRSSW 248
CI + T E+R+WR + N R W
Sbjct: 234 CIGKSLTMWELRSWRPYGTTINLMRHKW 261
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 142 RIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSRNL 35
++ P S L+ PP P +LP C++P + +S L
Sbjct: 41 QLPPSSHALYPPP---PPQLPTCVLPAGVRIYSSGL 73
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 154 IEKDASGENKLNVKFEPGELREAARTFEEARGKLKTYTPFLAGVGVKVI 300
+EKD + KLN K E E E T +E + + G GV+++
Sbjct: 1785 LEKDCTRFEKLNDKREEEEKNEKTNTLKEEKDHNTFEHTYSIGEGVELL 1833
>06_03_0535 +
21897912-21898064,21898151-21898246,21898362-21898474,
21898590-21898656,21898741-21898833,21898968-21899111,
21899693-21899781,21899910-21900015,21900119-21900206,
21900304-21900422,21900913-21901247,21901824-21901933,
21902070-21902179,21902303-21902413,21902870-21903174,
21903267-21903375
Length = 715
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 86 LAGLHQGRRMKMKGNWSYSLVLSLRKM 166
L+GL++G+R K W+Y + L K+
Sbjct: 560 LSGLNEGKRDLSKQKWTYQIGLKGEKL 586
>04_04_0311 - 24309411-24309525,24309627-24309841
Length = 109
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 159 ERCIWRKQTQCEIRAWRTERSC*NFRRSS 245
+RC+ R + + E+ +WRT + RR S
Sbjct: 57 DRCVQRMRARRELCSWRTRNLWGSLRRGS 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.135 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,692,043
Number of Sequences: 37544
Number of extensions: 129873
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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