Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C04
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    26   5.8  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    26   5.8  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    26   5.8  

>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 163 LSQ*QHQRIAPVSLHLHSPP 104
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 163 LSQ*QHQRIAPVSLHLHSPP 104
           + Q QHQ   P  +H+H+PP
Sbjct: 346 MHQHQHQIAPPQRIHIHNPP 365


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 163 LSQ*QHQRIAPVSLHLHSPP 104
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 97  QPCKLPPCIIPNT 59
           +PCK PPCII  T
Sbjct: 256 KPCKNPPCIIKTT 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,448,695
Number of Sequences: 27780
Number of extensions: 110667
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)