Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C04
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   7.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   7.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   7.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 109 ANEDEGKLELFSGVVIEKDASGENKLNVKFEPGELREAA 225
           +NEDE +  L   VVI  D S E  L    E    R +A
Sbjct: 434 SNEDEDETPLDPVVVISNDKSTEFFLATVVEEAACRFSA 472


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -1

Query: 129 FPFIFIRRPWCSPASYHHA 73
           FP  +I  PW +P +   A
Sbjct: 456 FPTRYIHEPWNAPLNVQRA 474


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 98  AALQATTMHNTKHNTRIFSKF 36
           + L +T  + +KHNT+ F+++
Sbjct: 378 SCLGSTETYYSKHNTQQFTQY 398


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 27 LQSKFRENACIVFGIM 74
          LQ++   ++C++FG++
Sbjct: 7  LQAESDVSSCVIFGVL 22


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 27 LQSKFRENACIVFGIM 74
          LQ++   ++C++FG++
Sbjct: 7  LQAESDVSSCVIFGVL 22


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/25 (24%), Positives = 12/25 (48%)
 Frame = +2

Query: 62  VWYYAWW*LAGLHQGRRMKMKGNWS 136
           +W++ W     L  G  +K   +W+
Sbjct: 1   MWHFLWIVFLALANGEEIKTIYSWN 25


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 103 LVQPCKLPPCIIPNTI 56
           L  PCK P  I+P  +
Sbjct: 66  LSNPCKHPTIIMPQDV 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,383
Number of Sequences: 438
Number of extensions: 1291
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)