Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C03
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   3.7  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   4.9  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   6.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.6  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 214 KFENCVNPCIRHLDQIRKYTESKTDINVSDVDFAGSASVRDRPGSTRC 357
           +++ CV+     L ++  Y  SKTD+    V      +V+DR  S+ C
Sbjct: 397 RYKECVDKLSMFLRRVAGYN-SKTDVKYMPVSAYTGQNVKDRVDSSVC 443


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 445  PISTPSTVESVPLPTGSLQLP 507
            PI  PST   VP+PT +  +P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVP 1053


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 213 NMKHSIPCNVRNDSFHPTSLSSRKPSCPYFFSYFKLSRLTEFFMR 79
           ++ +S    + ND   P  ++S   S   F  +  LSR+   F+R
Sbjct: 379 SLPNSFDFTLENDQVPPRLIASECTSLEVFIQHITLSRILSHFVR 423


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 163 WMKGIITNVTGNRMFHIKFENCVN 234
           W + ++    G+   HI+F NC N
Sbjct: 375 WQRSLLATGAGSHDKHIRFYNCFN 398


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 196 NRMFHIKFENCVNPC-IRHLDQIRKYTESKTDINVSDVDFAGSASVRDRPGSTRCVRPVQ 372
           N+M  I  E+      +RHL +I +++      N+S   F G+ S ++R  S+  + P++
Sbjct: 409 NQMHRIVLESAYPISNVRHL-KIAEHSSLAYSNNISVRWFLGATSAQNRNASSEAILPIE 467


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 178  ITNVTGNRM-FHIKFENCVNPCIRHLD 255
            I N TG+ +     FEN  + C+RHL+
Sbjct: 1811 IHNYTGHAVSVWADFENAADSCVRHLE 1837


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,985
Number of Sequences: 5004
Number of extensions: 37987
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)