Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C03
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0073 + 555485-556315 30 0.93
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 29 1.6
06_03_0339 - 19687749-19690805 29 2.8
04_03_0098 + 11183039-11183752 29 2.8
04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684 28 5.0
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 27 6.5
01_06_0695 - 31292622-31293317 27 6.5
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415... 24 7.1
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 27 8.7
02_04_0603 + 24281206-24281440,24281525-24282215,24282960-242830... 27 8.7
02_01_0333 + 2370032-2371075 27 8.7
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 27 8.7
01_02_0033 - 10374009-10374238,10374876-10375011 27 8.7
>01_01_0073 + 555485-556315
Length = 276
Score = 30.3 bits (65), Expect = 0.93
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 506 GNCNDPVGNG--TDSTVLGVDIGAGSSTPDGGLNEGGGDSELSLDVDCTGR 360
GN D VG G T + G G G++T G EGGG+S V GR
Sbjct: 175 GNVADGVGGGDATGTGGGGTVAGGGTATGGAGGGEGGGESGCGGGVAAEGR 225
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 488 VGNGTDSTVLGVDIGAGSSTPDGGLNEGGGDS--ELSLD 378
V D+ LGV GSS DG +++GG DS + SLD
Sbjct: 345 VAAAADAVELGVGRKTGSSEEDGTVSDGGDDSCEDKSLD 383
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 506 GNCNDPVGNGTDSTVLGVDIGAGSSTPDGGLNEGGGDSELSLDVDCTGRTH 354
G+ D GNG D V + GGL GG ++E L+ D TG H
Sbjct: 369 GDDTDCHGNGDDGFVSSPSL---KRLRKGGLFHGGENNETKLNADTTGPGH 416
>04_03_0098 + 11183039-11183752
Length = 237
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 482 NGTDSTV-LGVDIGAGSSTPDGGLNEGGGDSELSLDVD 372
NG+D+T+ G +G G T GG + GG + + VD
Sbjct: 80 NGSDTTIGFGGGVGGGVGTSRGGGSSAGGGVGVGVGVD 117
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 485 GNGTDSTVLGVDIGAGSSTPDGGLNEGGG 399
G+GT + V G GS + +GG GGG
Sbjct: 182 GSGTGRSGNAVGTGQGSGSANGGTGSGGG 210
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 488 VGNGTDSTVLGVDIGAGSSTPDGGLNEGGGD 396
VG G +GV G +S+ DG + GGG+
Sbjct: 118 VGRGGVDVGIGVGGGGAASSADGSVGGGGGE 148
>04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684
Length = 402
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 479 GTDSTVLGVDIGAGSSTPDGGLNEGGGDSELSLDVDCTGRTHLVEPGRSL 330
G D+T +G G+ P GG+ GGD+ + VD TG +V G L
Sbjct: 18 GVDATGGEEVVGGGAGLPGGGVWLLGGDTVVP-GVDATGGEEVVGGGARL 66
>03_01_0306 +
2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 19 HLRTRLDLVLPSNLENNEAASHKELCKSRQF 111
H + R+DLV +E ASH+ L +S++F
Sbjct: 423 HDKKRMDLVRQKFVEAKHLASHENLLQSKEF 453
>01_06_0695 - 31292622-31293317
Length = 231
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +1
Query: 364 PVQSTSRLXXXXXXXXXXXXXGVLLPAPISTPSTVESVPLPTGSLQ 501
P STS L P+P P T+E+ P PT +Q
Sbjct: 19 PSSSTSSSSSSSTSPSHPHHRAPLPPSPRPVPRTIETTPFPTTFVQ 64
>02_02_0444 +
10340927-10341063,10341157-10341241,10341480-10341537,
10343738-10345885,10345943-10346388
Length = 957
Score = 24.2 bits (50), Expect(2) = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 464 VLGVDIGAGSSTPDGGLNEGGG 399
V+G + G GGL+EGGG
Sbjct: 325 VVGGGLDGGGEVLGGGLDEGGG 346
Score = 21.4 bits (43), Expect(2) = 7.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 422 GGLNEGGGDSELSLD 378
GGL+EGGG + LD
Sbjct: 384 GGLDEGGGVVDGGLD 398
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 397 TQSSALMLIVPVAHISSSRAGPSPTHFQQNQHHSH 293
T SS+ L +SSS + P + QQ QHH H
Sbjct: 374 TSSSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHH 408
>02_04_0603 +
24281206-24281440,24281525-24282215,24282960-24283042,
24283313-24283401,24283560-24283633,24283721-24283771,
24283998-24284074,24284568-24285370
Length = 700
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -2
Query: 485 GNGTDSTVLGVDIGAGSSTP---DGGLNEGGGDSELSLDVDCTGRTHLVEPGRSLTDALP 315
G + S L + G+ S P GG N GG +E + + + PG +A+P
Sbjct: 231 GTSSQSLALSMSTGSHSHLPIVVAGGGNASGGAAESTSSENKRASGAMDSPGGGAIEAVP 290
Query: 314 AKS 306
KS
Sbjct: 291 RKS 293
>02_01_0333 + 2370032-2371075
Length = 347
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -2
Query: 404 GGDSELSLDVDCTGRTHLVEPGRSLTDALPAKSTSLTL----MSVLDSVYFL 261
GG+ + + D T RT L +PG LPA L L ++V D +Y L
Sbjct: 80 GGNHNMVVAADQTCRTVLYDPGEHAVRTLPALPYQLELPTASVTVGDDLYIL 131
>01_06_1507 -
37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 376 LIVPVAHISSSR--AGPSPTHFQQN 308
LIVPVA SR +GP P+ ++QN
Sbjct: 439 LIVPVARFQGSRLASGPVPSPYEQN 463
>01_02_0033 - 10374009-10374238,10374876-10375011
Length = 121
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -2
Query: 488 VGNGTDSTVLGVDIGAGSSTPDGGLNEGGGDSELS---LDVDCTGRTH 354
+G+G D+T +DIG G + DGG GGG L +DV TG H
Sbjct: 75 LGDGKDTTTKILDIGEGDN--DGG--GGGGSCRLRQAVIDVMGTGIYH 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,994,817
Number of Sequences: 37544
Number of extensions: 264963
Number of successful extensions: 1139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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