Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C03
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical
           protein F59A6.4 protein.
          Length = 752

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 419 GLNEGGGDSELSLDVDCTGRTHLVEPGRSLTD 324
           GL+E GGD++ S+D   TG    V  GR+  D
Sbjct: 392 GLDEIGGDTDRSVDCRMTGDRDFVPKGRNRKD 423


>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 208 HIKFENCVNPCIRHLDQIRK 267
           + +F+ CVN C++H  + RK
Sbjct: 442 NFEFKECVNNCVKHYREFRK 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,062,570
Number of Sequences: 27780
Number of extensions: 218478
Number of successful extensions: 839
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)