Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C03
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.26 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   1.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 500 CNDPVGNGTDSTVLGVDIGAGSSTPDGGLNEGGGDSELSL 381
           C D +G    S+  GV  GA   +   G N GGG   L +
Sbjct: 15  CCDNLGGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGI 54


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 439 PAPISTPSTVESVPLPTGSLQ 501
           P P    +T+ SVP P  SL+
Sbjct: 44  PLPFGVENTISSVPQPPRSLE 64


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 64  NNEAASHKELCKSRQFKIGEKVWARWFTARKASWMKGIITNVTGNRMFH 210
           N EA + KE  K  Q    E  W+R    R    + G + ++    +FH
Sbjct: 135 NIEAVTTKEKAKFPQEFFPECKWSRKGFLRTRWSISGTVFDLINIHLFH 183


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 203 CFILNLKIVLIHVSDI 250
           CF L   I+ +H+SD+
Sbjct: 418 CFNLMYWIIYLHISDV 433


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 203 CFILNLKIVLIHVSDI 250
           CF L   I+ +H+SD+
Sbjct: 418 CFNLMYWIIYLHISDV 433


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 223 NCVNPCIRHLDQIRKYTESKTDINVSDVDFAGSASVR 333
           NC    +  LDQ ++Y  SK    ++D+   G A  R
Sbjct: 169 NCELVGLHDLDQSQEYVRSKLVDFLNDLVAIGVAGFR 205


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 341 PARRDVCDRYNQHQG 385
           P + DVC+R  +H G
Sbjct: 147 PYKCDVCERAFEHSG 161


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 292 NVSDVDFAGSASVRDRPGST 351
           + S+ +  G ASV+  PGST
Sbjct: 160 DASEKEQLGLASVKAEPGST 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,822
Number of Sequences: 438
Number of extensions: 2503
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)