Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C02
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...   122   3e-29
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    29   0.45 
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   2.4  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   4.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.3  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   7.3  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    24   9.6  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    24   9.6  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  122 bits (293), Expect = 3e-29
 Identities = 56/101 (55%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
 Frame = +3

Query: 144 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARD-KTKVAINADI 320
           +S K+ ID T    D I DV  FEKYL +R+KV+GKT NLG+ VV++R+  +K+A+ A I
Sbjct: 8   VSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHI 67

Query: 321 PFSKRYLRYLTKRYLKKNNLRDWLRVVASAHDSYELRYFNI 443
            FS RYL+YLTK++LKK++LRDWLRVV++    YELRY+N+
Sbjct: 68  DFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYYNV 108


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -3

Query: 274 T*LPRLFVLPSTLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIF-LLAPLPRILPPFTP 98
           T +P+L  L   +T  +  F++    R+    G ++++  L ++F +L  L RI+ PFTP
Sbjct: 714 TVVPQLLGLIEEMTNWYIRFNR---RRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTP 770

Query: 97  FL 92
           F+
Sbjct: 771 FI 772


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 361 TSRKTIFGT-GSEWWLLHMTHMSYATS 438
           TS K +FG  G  WW+L +T   Y T+
Sbjct: 188 TSTKVLFGLLGLWWWMLFVTASFYHTT 214


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 234  VKVEGKTNNLGNHVVIARDKTKVAINADIP 323
            +K+ G  NNL +++ +   +T++  + DIP
Sbjct: 1210 IKLVGMANNLNDNLELEEFRTRITNSMDIP 1239


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 198  DVGNFEKYLKERVKVEGKTNNLGNH 272
            + GN +KY +  +KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 351 TKRYLKKNNLRDWLRVVASAHDSY 422
           T RY K NN++D  R++    D +
Sbjct: 234 TIRYFKHNNMKDLERILQELEDDF 257


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 10  SATRVLLPRWQLQRSPSQRKAS 75
           +ATR ++  W LQ +P  + A+
Sbjct: 500 AATRCIVDTWMLQHAPQSKSAN 521


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 68  RPVTPEDW*ERSKRWQNSRQR 130
           R   P++W ER K W+  +++
Sbjct: 229 RDFYPDNWLERQKSWEEEKEQ 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,419
Number of Sequences: 5004
Number of extensions: 35070
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)