Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_C02
(456 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal prote... 124 3e-29
Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical p... 29 2.1
Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF005246-1|AAB95119.1| 556|Caenorhabditis elegans voltage-depen... 29 2.1
AC006830-7|AAK68613.2| 479|Caenorhabditis elegans Hypothetical ... 29 2.1
U58760-3|AAL02443.1| 53|Caenorhabditis elegans Ribosomal prote... 27 4.9
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 27 8.6
>U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform a protein.
Length = 130
Score = 124 bits (299), Expect = 3e-29
Identities = 54/102 (52%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
Frame = +3
Query: 144 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLG-NHVVIARDKTKVAINADI 320
+ LKF ++C +P ED IL + + E +L E++KV GKT +L N+V + K+KV++ +++
Sbjct: 19 VHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEV 78
Query: 321 PFSKRYLRYLTKRYLKKNNLRDWLRVVASAHDSYELRYFNIN 446
PFSKRYL+YLTK+YLK+N+LRDWLRVVA ++YE+RYF+IN
Sbjct: 79 PFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYFHIN 120
>Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical
protein R186.5 protein.
Length = 479
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
++ +CA+ G LP+ +NFA FYS
Sbjct: 391 LIGSICALAGVLTIALPVPVIVSNFAMFYS 420
>Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
++ +CAV G LP+ +NFA FYS
Sbjct: 421 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 450
>Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
++ +CAV G LP+ +NFA FYS
Sbjct: 421 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 450
>Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
++ VCA+ G LP+ +NFA FYS
Sbjct: 489 LVGSVCALMGVLTIALPVPVIVSNFAMFYS 518
>Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
++ VCA+ G LP+ +NFA FYS
Sbjct: 489 LVGSVCALMGVLTIALPVPVIVSNFAMFYS 518
>AF005246-1|AAB95119.1| 556|Caenorhabditis elegans
voltage-dependent potassium channelalpha subunit
protein.
Length = 556
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
++ +CAV G LP+ +NFA FYS
Sbjct: 419 LVGSLCAVMGVLTIALPVPVIVSNFAMFYS 448
>AC006830-7|AAK68613.2| 479|Caenorhabditis elegans Hypothetical
protein ZK105.6 protein.
Length = 479
Score = 28.7 bits (61), Expect = 2.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 165 DCTHPAEDSILD---VGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAIN-ADIPFSK 332
DCT + I V NF++Y + VK K NNL + N A+ +S
Sbjct: 232 DCTKSIMEGICGKSAVENFDQYAQISVKNLNKMNNLAAQKKSFINGKACFFNIAEYNYSD 291
Query: 333 RYLRYLTKRYLK 368
+++YL K Y K
Sbjct: 292 EHIKYLKKNYDK 303
>U58760-3|AAL02443.1| 53|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform b protein.
Length = 53
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 144 ISLKFTIDCTHPAEDSILDV 203
+ LKF ++C +P ED IL +
Sbjct: 19 VHLKFNVECKNPVEDGILRI 38
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 355 SVTSRKTIFGTGSEWWLLHMTHM 423
SV + IFGT WWL++ T +
Sbjct: 170 SVIAMPQIFGTEDLWWLIYATEI 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,351,991
Number of Sequences: 27780
Number of extensions: 209399
Number of successful extensions: 596
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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