Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_C01
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   1.4  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   1.4  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    26   2.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    24   7.7  

>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
 Frame = +3

Query: 24  SSANPAVVTNAAQVALDTPPAISRPNRP--NSLQ-VPLSLTPAQLHNNKALGNNK-IAGI 191
           SS  P    N  + A  +P A+ +  RP  NS+Q  P S+      +N +L + + ++  
Sbjct: 38  SSQQPPSTPNGKEAA--SPSALKQNVRPSLNSVQQTPASIDAVASSSNVSLQSQQPLSKP 95

Query: 192 EISTPSNGI-----PFNFESLMEGGTGLTP--VHPHPCAHHQRAAPEVVSPDA 329
            +S+  N       P N  S     T   P  V P+P AHH       V P A
Sbjct: 96  VVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSVPPSA 148


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 24  SSANPAVVTNAAQVALDTPPAISRPNRPNSL 116
           +S N     NAA  A   PP + +P  PNSL
Sbjct: 145 TSTNSFYGNNAAATAPAPPPMMKKPAAPNSL 175


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 228 FESLMEGGTGLTPVHPHPCAHHQRAAPEVVSPDAHNSLVS 347
           + S  E GT     +PHPC  H     +V SP A  + VS
Sbjct: 123 YASPAEPGTAPLGTYPHPCV-HLTVNTDVSSPLAIKTYVS 161


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 24  SSANPAVVTNAAQVALDTPPAISRPN 101
           SSANPA+V+N        P   + P+
Sbjct: 101 SSANPAIVSNGGSPFYKNPVVANNPS 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,756
Number of Sequences: 5004
Number of extensions: 20747
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)